CAZypedia needs your help!
We have many unassigned pages in need of Authors and Responsible Curators. See a page that's out-of-date and just needs a touch-up? - You are also welcome to become a CAZypedian. Here's how.
Scientists at all career stages, including students, are welcome to contribute.
Learn more about CAZypedia's misson here and in this article.
Totally new to the CAZy classification? Read this first.
Difference between revisions of "Glycoside Hydrolase Family 151"
Line 29: | Line 29: | ||
== Substrate specificities == | == Substrate specificities == | ||
− | Members of GH151 have α-L-fucosidase activity (EC 3.2.1.51) <cite>Sela2012 Benesova2015 Lezyk2016</cite>. Activity has been observed on 4-nitrophenyl-α-L-fucopyranoside (pNP-α-L-Fuc) <cite>Benesova2015 Lezyk2016</cite> and on 2-chloro-4-nitrophenyl-α-L-fucopyranoside (CNP-α-L-Fuc) <cite>Sela2012</cite>. GH151 α-L-fucosidases are reportedly unable to catalyze hydrolysis of human milk oligosaccharide structures 2'-fucosyllactose (2'FL) and 3-fucosyllactose (3FL) <cite>Sela2012 Lezyk2016</cite>, but slight activity has been observed on the blood group H antigen disaccharide Fuc-α-1,2-Gal <cite>Sela2012</cite>. No activity was observed on fucosylated xyloglucan <cite>Lezyk2016</cite>. | + | Members of [[GH151]] have α-L-fucosidase activity (EC 3.2.1.51) <cite>Sela2012 Benesova2015 Lezyk2016</cite>. Activity has been observed on 4-nitrophenyl-α-L-fucopyranoside (pNP-α-L-Fuc) <cite>Benesova2015 Lezyk2016</cite> and on 2-chloro-4-nitrophenyl-α-L-fucopyranoside (CNP-α-L-Fuc) <cite>Sela2012</cite>. GH151 α-L-fucosidases are reportedly unable to catalyze hydrolysis of human milk oligosaccharide structures 2'-fucosyllactose (2'FL) and 3-fucosyllactose (3FL) <cite>Sela2012 Lezyk2016</cite>, but slight activity has been observed on the blood group H antigen disaccharide Fuc-α-1,2-Gal <cite>Sela2012</cite>. No activity was observed on fucosylated xyloglucan <cite>Lezyk2016</cite>. |
+ | |||
+ | The first characterized members of GH151 were perceived as members of [[GH29]] due to their α-L-fucosidase activity <cite>Sela2012 Lezyk2016</cite>. However, phylogenetic analysis and sequence alignment revealed poor homology to GH29 <cite>Sela2012 Lezyk2016</cite>. Based on the low sequence similarity to GH29, it was suggested that a new GH family be created <cite>Benesova2015 Lezyk2016</cite>. Sequence homology to beta-galactosidase trimerization domains has been reported <cite>Sela2012 Lezyk2016</cite>. Consequently, one GH151 α-L-fucosidase was tested for activity on ... | ||
== Kinetics and Mechanism == | == Kinetics and Mechanism == |
Revision as of 01:36, 4 June 2020
This page is currently under construction. This means that the Responsible Curator has deemed that the page's content is not quite up to CAZypedia's standards for full public consumption. All information should be considered to be under revision and may be subject to major changes.
- Author: ^^^Casper Wilkens^^^, ^^^David Teze^^^, and ^^^Birgitte Zeuner^^^
- Responsible Curator: ^^^Birgitte Zeuner^^^
Glycoside Hydrolase Family GH151 | |
Clan | None |
Mechanism | Retaining (inferred) |
Active site residues | Not known |
CAZy DB link | |
https://www.cazy.org/GH151.html |
Substrate specificities
Members of GH151 have α-L-fucosidase activity (EC 3.2.1.51) [1, 2, 3]. Activity has been observed on 4-nitrophenyl-α-L-fucopyranoside (pNP-α-L-Fuc) [2, 3] and on 2-chloro-4-nitrophenyl-α-L-fucopyranoside (CNP-α-L-Fuc) [1]. GH151 α-L-fucosidases are reportedly unable to catalyze hydrolysis of human milk oligosaccharide structures 2'-fucosyllactose (2'FL) and 3-fucosyllactose (3FL) [1, 3], but slight activity has been observed on the blood group H antigen disaccharide Fuc-α-1,2-Gal [1]. No activity was observed on fucosylated xyloglucan [3].
The first characterized members of GH151 were perceived as members of GH29 due to their α-L-fucosidase activity [1, 3]. However, phylogenetic analysis and sequence alignment revealed poor homology to GH29 [1, 3]. Based on the low sequence similarity to GH29, it was suggested that a new GH family be created [2, 3]. Sequence homology to beta-galactosidase trimerization domains has been reported [1, 3]. Consequently, one GH151 α-L-fucosidase was tested for activity on ...
Kinetics and Mechanism
The mechanism of GH151 has not been determined, but based on reports that two members of GH151 can catalyze transglycosylation using pNP-α-L-Fuc as donor substrate [2, 3], a retaining mechanism has been inferred.
Catalytic Residues
The catalytic residues of GH151 are unknown.
Three-dimensional structures
No three-dimensional structures have been solved for GH151.
Family Firsts
- First stereochemistry determination
- Content is to be added here.
- First catalytic nucleophile identification
- Content is to be added here.
- First general acid/base residue identification
- Content is to be added here.
- First 3-D structure
- Content is to be added here.
References
- Sela DA, Garrido D, Lerno L, Wu S, Tan K, Eom HJ, Joachimiak A, Lebrilla CB, and Mills DA. (2012). Bifidobacterium longum subsp. infantis ATCC 15697 α-fucosidases are active on fucosylated human milk oligosaccharides. Appl Environ Microbiol. 2012;78(3):795-803. DOI:10.1128/AEM.06762-11 |
- Benešová E, Lipovová P, Krejzová J, Kovaľová T, Buchtová P, Spiwok V, and Králová B. (2015). Alpha-L-fucosidase isoenzyme iso2 from Paenibacillus thiaminolyticus. BMC Biotechnol. 2015;15:36. DOI:10.1186/s12896-015-0160-x |
- Lezyk M, Jers C, Kjaerulff L, Gotfredsen CH, Mikkelsen MD, and Mikkelsen JD. (2016). Novel α-L-Fucosidases from a Soil Metagenome for Production of Fucosylated Human Milk Oligosaccharides. PLoS One. 2016;11(1):e0147438. DOI:10.1371/journal.pone.0147438 |