Glycoside Hydrolase Family 44

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• Author: ^^^Peter Reilly^^^
• Responsible Curator: ^^^Peter Reilly^^^

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Glycoside Hydrolase Family GH44
Clan	None specified, but Kitago et al. [1] and Nam et al. [2] suggest that it belongs to Clan GH-A.
Mechanism	Retaining
Active site residues	Catalytic proton donor/acceptor: Glu Catalytic nucleophile: Glu
CAZy DB link
https://www.cazy.org/GH44.html

Substrate specificities

Active on many substances, including cellooligosaccharides of DP4 and longer, carboxymethylcellulose, xylan, lichenan, Avicel (slightly), and xyloglucan, which appears to be a prime substrate [3, 4].

Kinetics and Mechanism

The most complete analyses of kinetics on various substrates are by Najmudin et al. [3] and by Warner et al. [4, 5]. GH44 endoglucanases are also xyloglucanases. They hydrolyze longer cellooligosaccharides faster than shorter cellooligosaccharides [4, 5]. They act asymmetrically on cellooligosaccharides, for instance producing more cellobiose and cellotetraose than cellotriose from cellohexaose [4, 5], with substrates bound with more of their residues in negatively-numbered than in positively-numbered subsites. Furthermore, disproportionation occurs, with more cellotetraose than cellobiose formed from cellohexaose, evidently caused by formation of larger unobserved products that are then rapidly hydrolyzed [4, 5]. The mechanism is retaining [1], with a covalent bond being formed between the catalytic nucleophile and the C1' atom, leading to liberation of the leaving group; subsequently, the glycosyl-enzyme is cleaved by water.

Catalytic Residues

The catalytic residues in this family have been suggested by several experiments with diverse enzymes. These include:

• Clostridium thermocellum endoglucanase: Catalytic proton donor/acceptor, Glu186; catalytic nucleophile, Glu359; by soaking the wild-type crystals with cellopentaose or cellohexaose and noting the positions of the residues relative to the reducing end of the cellotetraose product [1], and also by finding no activity with E186Q and E359Q mutants.
• Protein from metagenomic library: Catalytic proton donor/acceptor, Glu221; catalytic nucleophile, Glu393 by location in the active site of the wild-type crystal structure [2].
• Clostridium acetobutylicum xyloglucanase/endoglucanase: Catalytic proton donor/acceptor, Glu180; catalytic nucleophile, Glu352 also by location in the crystal structure of the wild-type enzyme, and by comparison with the C. thermocellum structure [5].

Three-dimensional structures

The first three-dimensional structure was by Kitago et al., who found a TIM-like barrel domain and a beta-sandwich domain in C. thermocellum endoglucanase [1]. Similar structures were found by Nam et al. [2] in a protein from a metagenomic library and by Warner et al. [5] in C. acetobutylicum endoglucanase. Ca⁺⁺ and Zn⁺⁺ ions are found as ligands [1].

Family Firsts

First stereochemistry determination

Kitago et al. [1] found that C. thermocellum endoglucanase acts by a retaining mechanism. They observed that a beta-anomer was preferentially formed during cyclohexaitol hydrolysis.

First catalytic nucleophile identification

Kitago et al. [1], by testing activity of the C. thermocellum endoglucanase E359Q mutant.

First general acid/base residue identification

Kitago et al. [1], by testing activity of the C. thermocellum endoglucanase E186Q mutant.

First 3-D structure

Kitago et al. [1] of C. thermocellum endoglucanase. It had a resolution of 0.96 Å and allowed the identification of the catalytic residues and the mechanism.

References

1. Kitago Y, Karita S, Watanabe N, Kamiya M, Aizawa T, Sakka K, and Tanaka I. (2007). Crystal structure of Cel44A, a glycoside hydrolase family 44 endoglucanase from Clostridium thermocellum. J Biol Chem. 2007;282(49):35703-11. DOI:10.1074/jbc.M706835200 |
2. Nam KH, Kim SJ, and Hwang KY. (2009). Crystal structure of CelM2, a bifunctional glucanase-xylanase protein from a metagenome library. Biochem Biophys Res Commun. 2009;383(2):183-6. DOI:10.1016/j.bbrc.2009.03.149 |
3. Najmudin S, Guerreiro CI, Carvalho AL, Prates JA, Correia MA, Alves VD, Ferreira LM, Romão MJ, Gilbert HJ, Bolam DN, and Fontes CM. (2006). Xyloglucan is recognized by carbohydrate-binding modules that interact with beta-glucan chains. J Biol Chem. 2006;281(13):8815-28. DOI:10.1074/jbc.M510559200 |

4. Warner CD, Go RM, García-Salinas C, Ford C, and Reilly PJ. Kinetic characterization of a glycoside hydrolase family 44 xyloglucanase/endoglucanase from Ruminococcus flavefaciens FD-1. Enzyme Microb Technol 2011 Jan 5; 48 (1) 27-32. doi:10.1016/j.enzmictec.2010.08.009 pmid: .

5. Warner CD, Hoy JA, Shilling TC, Linnen MJ, Ginder ND, Ford CF, Honzatko RB, and Reilly PJ. (2010). Tertiary structure and characterization of a glycoside hydrolase family 44 endoglucanase from Clostridium acetobutylicum. Appl Environ Microbiol. 2010;76(1):338-46. DOI:10.1128/AEM.02026-09 |