CAZypedia celebrates the life of Senior Curator Emeritus Harry Gilbert, a true giant in the field, who passed away in September 2025.

CAZypedia needs your help!

We have many unassigned pages in need of Authors and Responsible Curators. See a page that's out-of-date and just needs a touch-up? - You are also welcome to become a CAZypedian. Here's how.
Scientists at all career stages, including students, are welcome to contribute.
Learn more about CAZypedia's misson here and in this article. Totally new to the CAZy classification? Read this first.

Difference between revisions of "Talk:Glycoside Hydrolase Family 3"

From CAZypedia
Jump to navigation Jump to search
(Created page with "Litzinger et al. (2010) suggested that the acid/base catalyst of 2 domain NagZs (and also 1 domain NagZs) is an Asp-His dyad in the (β/α)<sub>8</sub> domain. pmid: 208...")
 
Line 1: Line 1:
 
Litzinger et al. (2010) suggested that the acid/base catalyst of 2 domain NagZs (and also 1 domain NagZs) is an Asp-His dyad in the (&beta;/&alpha;)<sub>8</sub> domain. pmid: 20826810.
 
Litzinger et al. (2010) suggested that the acid/base catalyst of 2 domain NagZs (and also 1 domain NagZs) is an Asp-His dyad in the (&beta;/&alpha;)<sub>8</sub> domain. pmid: 20826810.
 +
 +
== Update to Catalytic Residues section needed? ==
 +
 +
Given the growing amount of information about the identity of the GH3 catalytic residues, and in particular the acid/base, in different enzymes/subfamilies, I wonder if a update of this section isn't needed?
 +
 +
Here are some key acid/base ID references <cite>Thongpoo2012 Bacik2012 Litzinger2010 Pozzo2010 Yoshida2010 Li2006 Paal2004 Chir2002 Li2002</cite>, one of which also confirms the catalytic nucleophile <cite>Paal2004</cite>.  These references are nucleophile-specific studies <cite>Vocadlo2000 Dan2000</cite>:
 +
 +
=== References ===
 +
 +
<biblio>
 +
#Thongpoo2012 pmid=23201198 // Subfamily 4, via kinetic analysis & azide rescue
 +
#Bacik2012 pmid=23177201 // NagZ subfamily, ligand complex
 +
#Litzinger2010 pmid=20826810 // NagZ sunfamily, kinetic analysis
 +
#Pozzo2010 pmid=20138890 // Subfamily 5
 +
#Yoshida2010 pmid=20662765 // Subfamily 5
 +
#Li2006 pmid=16717412 //double-check
 +
#Paal2004 pmid=14561218 //Subfamily 5
 +
#Chir2002 pmid=11978178 // Subfamily 5
 +
#Li2002 pmid=11851422 // Nag - relevant? Mis-identification.
 +
#Vocadlo2000 pmid=10625486
 +
#Dan2000 pmid=10671536
 +
</biblio>
 +
 +
 +
[[User:Harry Brumer|Harry Brumer]] ([[User talk:Harry Brumer|talk]]) 17:55, 14 December 2012 (PST)

Revision as of 17:55, 14 December 2012

Litzinger et al. (2010) suggested that the acid/base catalyst of 2 domain NagZs (and also 1 domain NagZs) is an Asp-His dyad in the (β/α)8 domain. pmid: 20826810.

Update to Catalytic Residues section needed?

Given the growing amount of information about the identity of the GH3 catalytic residues, and in particular the acid/base, in different enzymes/subfamilies, I wonder if a update of this section isn't needed?

Here are some key acid/base ID references [1, 2, 3, 4, 5, 6, 7, 8, 9], one of which also confirms the catalytic nucleophile [7]. These references are nucleophile-specific studies [10, 11]:

References

Error fetching PMID 23201198:
Error fetching PMID 23177201:
Error fetching PMID 20826810:
Error fetching PMID 20138890:
Error fetching PMID 20662765:
Error fetching PMID 16717412:
Error fetching PMID 14561218:
Error fetching PMID 11978178:
Error fetching PMID 11851422:
Error fetching PMID 10625486:
Error fetching PMID 10671536:
  1. Error fetching PMID 23201198: [Thongpoo2012]

    Subfamily 4, via kinetic analysis & azide rescue

  2. Error fetching PMID 23177201: [Bacik2012]

    NagZ subfamily, ligand complex

  3. Error fetching PMID 20826810: [Litzinger2010]

    NagZ sunfamily, kinetic analysis

  4. Error fetching PMID 20138890: [Pozzo2010]

    Subfamily 5

  5. Error fetching PMID 20662765: [Yoshida2010]

    Subfamily 5

  6. Error fetching PMID 16717412: [Li2006]

    double-check

  7. Error fetching PMID 14561218: [Paal2004]

    Subfamily 5

  8. Error fetching PMID 11978178: [Chir2002]

    Subfamily 5

  9. Error fetching PMID 11851422: [Li2002]

    Nag - relevant? Mis-identification.

  10. Error fetching PMID 10625486: [Vocadlo2000]
  11. Error fetching PMID 10671536: [Dan2000]

All Medline abstracts: PubMed


Harry Brumer (talk) 17:55, 14 December 2012 (PST)

Retrieved from "http://www.cazypedia.org/index.php?title=Talk:Glycoside_Hydrolase_Family_3&oldid=8003"