Phosphorylases

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• Author: Spencer Williams
• Responsible Curator: Spencer Williams

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Overview

Phosphorylases are enzymes that catalyze the phosphorolysis of the glycosidic bond. They are usually named using a combination of the ‘substrate name’ and ‘phosphorylase’.

Phosphorolysis of a glycosidic bond can occur with retention or inversion of configuration and always occurs in an exo-fashion leading to formation of a mono- or disaccharide-1-phosphate.

The energy content of the sugar-1-phosphate product means that the cleavage reaction is often in a practical sense reversible and, in Nature, these enzymes may be involved in either synthesis or cleavage of the glycosidic bond. As such there is a relatively fine distinction among sugar phosphorylases, glycoside hydrolases and classical sugar nucleoside (di)phosphate dependent glycosyltransferases. In the last case the synthetic reaction is normally, but not always, irreversible because of the higher energy of a sugar nucleoside (di)phosphate.
The phosphorylases are classified into various GH and GT families on the basis of sequence similarity [1].

Glycosyltransferase-like phosphorylases

The classical example of a phosphorylase is glycogen phosphorylase. This enzyme catalyzes the cleavage of individual glucosyl residues from glycogen (up to five residues from a branchpoint), forming sequentially deglycosylated glycogen and glucose-1-phosphate. Glycogen phosphorylase has a complex mechanism that is not fully understood and requires pyridoxal phosphate (PLP) as a cofactor. Glycogen phosphorylase is classified into the same sequence-related glycosyltransferase family as starch phosphorylases (GT35), which also require a PLP cofactor. Trehalose phosphorylase is another enzyme that is classified as a glycosyltransferase and belongs to GT4.

Glycoside hydrolase-like phosphorylases

Most sugar phosphorylases act on glucosides and many cleave simple disaccharides such as sucrose, trehalose, cellobiose and maltose leading to glucose-1-phosphate and the other component sugar (glucose or fructose). Other sugar phosphorylases are known that act on chitobiose, laminaribiose, 1,3-beta-glucan and nucleosides.

Examples

• Family GH13 contains sucrose phosphorylase.
• Family GH65 contains maltose phosphorylase, trehalose phosphorylase, kojibiose (Glc-α-1,2-Glc) phosphorylase, and trehalose 6-phosphate phosphorylase.
• Family GH94 contains cellobiose phosphorylase, cellodextrin phosphorylase, and chitobiose phosphorylase.

• Family GH112 contains beta-galactoside phosphorylase, β-1,3-D-galactosyl-D-hexososamine phosphorylase, and β-1,4-D-galactosyl-L-rhamnose phosphorylase.

Mechanism

Sequence and structural analysis of sugar phosphorylases reveal that many have sequences and structures (and likely mechanisms) similar to glycosyltransferases, whereas others have sequences and structures that more closely resemble glycoside hydrolases (GH13, GH65).

Inverting phosphorylase mechanism

Phosphorolysis of a glycoside by a GH phosphorylase with net inversion of anomeric configuration is generally achieved via a one step, single-displacement mechanism involving oxocarbenium ion-like transition states, as shown below. The reaction occurs with acid/base assistance from a suitably positioned carboxylate residue. This mechanism has clear parallels with the mechanism for inverting glycoside hydrolases.

Retaining phosphorylase mechanism

Phosphorolysis of a glycoside with net retention of configuration is achieved via a two step, double-displacement mechanism involving a covalent glycosyl-enzyme intermediate, as shown in the figure below. Each step passes through an oxocarbenium ion-like transition state. Reaction occurs with acid/base and nucleophilic assistance provided by two amino acid side chains, typically glutamate or aspartate. In the first step (called the glycosylation step), one residue plays the role of a nucleophile, attacking the anomeric centre to displace the aglycon and form a glycosyl enzyme intermediate. At the same time the other residue functions as an acid catalyst and protonates the glycosidic oxygen as the bond cleaves. In the second step (known as the deglycosylation step), the glycosyl enzyme is hydrolyzed by phosphate, with the other residue now acting as a base catalyst deprotonating the phosphate as it attacks.

References

1. Nakai H, Kitaoka M, Svensson B, and Ohtsubo K. (2013). Recent development of phosphorylases possessing large potential for oligosaccharide synthesis. Curr Opin Chem Biol. 2013;17(2):301-9. DOI:10.1016/j.cbpa.2013.01.006 |