Difference between revisions of "Carbohydrate Binding Module Family 55"

Latest revision as of 13:15, 18 December 2021

This page has been approved by the Responsible Curator as essentially complete. CAZypedia is a living document, so further improvement of this page is still possible. If you would like to suggest an addition or correction, please contact the page's Responsible Curator directly by e-mail.

CAZy DB link
https://www.cazy.org/CBM55.html

Ligand specificities

Figure 1. Entamoeba proteins containing CBM55.

A CBM55, which is ~60-aa long and contains eight cysteines in conserved positions, was first identified at the N-terminus of the GH18 chitinase of Entamoeba histolytica, the protist that causes dysentery and liver abscess (Figure 1) [1, 2]. CBM55 members are also present at the N-termini of Jessie 3 lectins, which contain a self-aggregating (daub) domain, while CBM55 is the only domain in Jessie 1 and Jessie 2 lectins [3]. CBM55 members are present in GH18 chitinases and Jessie lectins of all five Entamoeba species that have been sequenced [4]. CBM55 members are absent from other eukaryotes, eubacteria, and archaea, and so the CBM55 motif appears to have been “created from scratch” by the common ancestor to Entamoebae. CBM55 members of E. histolytica chitinase, Jessie 1, and Jessie 3 lectins, each produced by gene expression under a constitutive actin promoter in transformed trophozoites, demonstrated binding to chitin beads [1].

Structural Features

While the presence of eight cysteines in conserved positions suggest that CBM55 is a disulfide knot, there is no structure for CBM55 [1]. Because CBM55 binds to chitin fibrils in the cyst wall, it is a type A CBM [3].

Functionalities

In the human intestine, motile E. histolytica trophozoites phagocytose bacteria and/or attach to and take bites out of (trogocytose) host epithelial cells [5]. Alternatively, trophozoites form cysts, which have chitin and deacetylated chitin (chitosan) in their wall [6, 7]. E. histolytica is transmitted when cysts are shed in the feces and contaminate food, soil, or water. When cysts are ingested, trophozoites escape their wall and are released into the intestine, completing the life cycle. The most abundant proteins identified by mass spectrometry of cyst walls of E. invadens, a model for the human pathogen, are chitinases, Jessie 3 lectins, and Jacob lectins, which contain two or three chitin-binding domains each with six conserved cysteines [8, 9]. Mass spectrometry and specific antibodies have confirmed the presence of chitinase, Jessie lectins, and Jacob lectins in cyst walls of E. histolytica, the human pathogen [10, 11]. Cyst wall proteins, which are absent from trophozoites but abundant in cysts, coat chitin fibrils and protect them from bacterial chitinases, which are ubiquitous in the environment [12, 13]. One function of CBM55 is to retain chitinase and Jessie 3 lectins in the cyst wall. The chitinase is likely involved in remodeling the cyst wall during encystation and breaking down the cyst wall when the trophozoite escapes during excystation. The daub domain of Jessie 3, which forms a biofilm when produced recombinantly as a fusion with maltose-binding protein in the periplasm of bacteria, makes the cyst wall impenetrable to molecules as small as one kilodalton [3].

Family Firsts

First Identified: A CBM55 was first identified at the N-terminus of the GH18 chitinase of Entamoeba histolytica [1, 2].
First Structural Characterization: There is no structure available.

References

All Medline abstracts: PubMed

@@ Line 1: / Line 1: @@
 <!-- RESPONSIBLE CURATORS: Please replace the {{UnderConstruction}} tag below with {{CuratorApproved}} when the page is ready for wider public consumption -->
-{{UnderConstruction}}
+{{CuratorApproved}}
-* [[Author]]: ^^^John Samuelson^^^
+* [[Author]]: [[User:John Samuelson|John Samuelson]]
-* [[Responsible Curator]]:  ^^^Elizabeth Ficko-Blean^^^
+* [[Responsible Curator]]:  [[User:Elizabeth Ficko-Blean|Elizabeth Ficko-Blean]]
 ----
@@ Line 17: / Line 17: @@
 == Ligand specificities ==
-A CBM55, which is ~60-aa long and contains eight cysteines in conserved positions, was first identified at the N-terminus of the [[GH18]] chitinase of ''Entamoeba histolytica'', the protist that causes dysentery and liver abscess (Fig. 1) <cite>Van_Dellen2002, de_la_Vega1997</cite>. CBM55 members are also present at the N-termini of Jessie 3 lectins, which contain a self-aggregating (daub) domain, while CBM55 is the only domain in Jessie 1 and Jessie 2 lectins [3]. CBM55 members are present in [[GH18]] chitinases and Jessie lectins of all five ''Entamoeba'' species that have been sequenced. CBM55 members are absent from other eukaryotes, eubacteria, and archaea, and so the CBM55 motif appears to have been “created from scratch” by the common ancestor to ''Entamoebae''.  CBM55 members of ''E. histolytica'' chitinase, Jessie 1, and Jessie 3 lectins, each produced by gene expression under a constitutive actin promoter in transformed trophozoites, demonstrated binding to chitin beads <cite>Van_Dellen2002</cite>.
+[[File:CBM55.png|thumb|150px|right|'''Figure 1.''' ''Entamoeba'' proteins containing CBM55.]]
+A CBM55, which is ~60-aa long and contains eight cysteines in conserved positions, was first identified at the N-terminus of the [[GH18]] chitinase of ''Entamoeba histolytica'', the protist that causes dysentery and liver abscess (Figure 1) <cite>Van_Dellen2002,de_la_Vega1997</cite>. CBM55 members are also present at the N-termini of Jessie 3 lectins, which contain a self-aggregating (daub) domain, while CBM55 is the only domain in Jessie 1 and Jessie 2 lectins <cite>Chatterjee2009</cite>. CBM55 members are present in [[GH18]] chitinases and Jessie lectins of all five ''Entamoeba'' species that have been sequenced <cite>Aurrecoechea2011</cite>. CBM55 members are absent from other eukaryotes, eubacteria, and archaea, and so the CBM55 motif appears to have been “created from scratch” by the common ancestor to ''Entamoebae''.  CBM55 members of ''E. histolytica'' chitinase, Jessie 1, and Jessie 3 lectins, each produced by gene expression under a constitutive actin promoter in transformed trophozoites, demonstrated binding to chitin beads <cite>Van_Dellen2002</cite>.
 == Structural Features ==
-''Content in this section should include, in paragraph form, a description of:''
+While the presence of eight cysteines in conserved positions suggest that CBM55 is a disulfide knot, there is no structure for CBM55 <cite>Van_Dellen2002</cite>. Because CBM55 binds to chitin fibrils in the cyst wall, it is a [[Carbohydrate-binding_modules#Types|type A]] CBM <cite>Chatterjee2009</cite>.
-* '''Fold:''' Structural fold (beta trefoil, beta sandwich, etc.)
-* '''Type:''' Include here Type A, B, or C and properties
-* '''Features of ligand binding:''' Describe CBM binding pocket location (Side or apex) important residues for binding (W, Y, F, subsites), interact with reducing end, non-reducing end, planar surface or within polysaccharide chains. Include examples pdb codes. Metal ion dependent. Etc.
 == Functionalities ==
-''Content in this section should include, in paragraph form, a description of:''
+In the human intestine, motile ''E. histolytica'' trophozoites phagocytose bacteria and/or attach to and take bites out of (trogocytose) host epithelial cells <cite>Ralston2014</cite>.  Alternatively, trophozoites form cysts, which have chitin and deacetylated chitin (chitosan) in their wall <cite>Van_Dellen2006a,Das2006</cite>. ''E. histolytica'' is transmitted when cysts are shed in the feces and contaminate food, soil, or water. When cysts are ingested, trophozoites escape their wall and are released into the intestine, completing the life cycle.
-* '''Functional role of CBM:''' Describe common functional roles such as targeting, disruptive, anchoring, proximity/position on substrate.
+The most abundant proteins identified by mass spectrometry of cyst walls of ''E. invadens'', a model for the human pathogen, are chitinases, Jessie 3 lectins, and Jacob lectins, which contain two or three chitin-binding domains each with six conserved cysteines <cite>Frisardi2000,Van_Dellen2006b</cite>. Mass spectrometry and specific antibodies have confirmed the presence of chitinase, Jessie lectins, and Jacob lectins in cyst walls of ''E. histolytica'', the human pathogen <cite>Ghosh2010,Ali2012</cite>.
-* '''Most Common Associated Modules:''' 1. Glycoside Hydrolase Activity; 2. Additional Associated Modules (other CBM, FNIII, cohesin, dockerins, expansins, etc.)
+Cyst wall proteins, which are absent from trophozoites but abundant in cysts, coat chitin fibrils and protect them from bacterial chitinases, which are ubiquitous in the environment <cite>Samuelson2011,Ehrenkaufer2013</cite>. One function of CBM55 is to retain chitinase and Jessie 3 lectins in the cyst wall. The chitinase is likely involved in remodeling the cyst wall during encystation and breaking down the cyst wall when the trophozoite escapes during excystation. The daub domain of Jessie 3, which forms a biofilm when produced recombinantly as a fusion with maltose-binding protein in the periplasm of bacteria, makes the cyst wall impenetrable to molecules as small as one kilodalton <cite>Chatterjee2009</cite>.
-* '''Novel Applications:'''  Include here if CBM has been used to modify another enzyme, or if a CBM was used to label plant/mammalian tissues? Etc.
 == Family Firsts ==
 ;First Identified
-:A CBM55 was first identified at the N-terminus of the [[GH18]] chitinase of ''Entamoeba histolytica''<cite>Van_Dellen2002, de_la_Vega1997</cite>.
+:A CBM55 was first identified at the N-terminus of the [[GH18]] chitinase of ''Entamoeba histolytica'' <cite>Van_Dellen2002, de_la_Vega1997</cite>.
 ;First Structural Characterization
-:Insert archetype here, possibly including ''very brief'' synopsis.
+:There is no structure available.
 == References ==
@@ Line 51: / Line 48: @@
 #Samuelson2011 pmid=20934911
 #Ehrenkaufer2013 pmid=23889909
+#Aurrecoechea2011 pmid=20974635
 </biblio>
 [[Category:Carbohydrate Binding Module Families|CBM055]]