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Difference between revisions of "User:Wade Abbott"
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'''Glycoside Hydrolases''' | '''Glycoside Hydrolases''' | ||
| − | *[[GH20]] ''Streptococcus pneumoniae'' exo-β-D-N-acetylglucosaminidase (SpnGH20AB/StrH)<cite>Pluvinage2013, Pluvinage2011</cite>. | + | *[[GH20]] ''Streptococcus pneumoniae'' exo-β-D-N-acetylglucosaminidase (SpnGH20AB/StrH) <cite>Pluvinage2013, Pluvinage2011</cite>. |
| − | *[[GH28]] ''Yersinia enterocolitica'' | + | *[[GH28]] ''Yersinia enterocolitica'' exopolygalacturonase (YeGH28) <cite>Abbott2007a</cite>. *Family First |
| − | *[[GH85]] ''Streptococcus pneumoniae'' | + | *[[GH85]] ''Streptococcus pneumoniae'' endo-β-D-glucosaminidase D (SpGH85/EndoD) <cite>Abbott2009a</cite>. *Family First |
'''Polysaccharide Lyases''' | '''Polysaccharide Lyases''' | ||
| − | *[[PL2]] ''Yersinia enterocolitica'' | + | *[[PL2]] ''Yersinia enterocolitica'' perplasmic pectate lyase (YePL2A) <cite>Abbott2007c</cite>. ''Paenibacillus sp. Y412MC10'' Cytoplasmic endolytic pectate lyase (PaePL2) <cite>Abbott2013</cite>. *Family First |
| − | *[[PL22]] ''Yersinia enterocolitica'' Cytoplasmic oligogalacturonate lyase (YePL22/Ogl)<cite>Abbott2010a</cite>. *Family First | + | *[[PL22]] ''Yersinia enterocolitica'' Cytoplasmic oligogalacturonate lyase (YePL22/Ogl) <cite>Abbott2010a</cite>. *Family First |
'''Carbohydrate Binding Modules''' | '''Carbohydrate Binding Modules''' | ||
*[[CBM6]] <cite>Abbott2009b</cite> | *[[CBM6]] <cite>Abbott2009b</cite> | ||
| − | *[[CBM32]] ''Yersinia enterocolitica'' | + | *[[CBM32]] ''Yersinia enterocolitica'' polygalacturonic acid binding protein (YeCBM32) <cite>Abbott2007b</cite>. ''Streptococcus pneumoniae'' EndoD CBM (SpnCBM32) <cite>Abbott2011</cite>. |
*[[CBM35]] <cite>Correia2010</cite> | *[[CBM35]] <cite>Correia2010</cite> | ||
| − | *[[CBM51]] ''Clostridium perfringens'' | + | *[[CBM51]] ''Clostridium perfringens'' blood group binding CBMs (GH95CBM51 and GH98CBM51) <cite>Finn2008</cite> |
'''Carbohydrate Esterases''' | '''Carbohydrate Esterases''' | ||
| − | *[[CE8]] ''Yersinia enterocolitica'' | + | *[[CE8]] ''Yersinia enterocolitica'' pectin methylesterase <cite>Abbott2012</cite> |
Revision as of 13:41, 23 September 2013
Dr. Abbott received his PhD from the University of Victoria in 2005. He then studied the molecular basis of protein-carbohydrate interactions under Dr. ^^^Alisdair Boraston^^^ at the University of Victoria. In 2008, Dr. Abbott joined Dr. ^^^Harry Gilbert^^^ at the Complex Carbohydrate Research Centre, at the University of Georgia where he investigated the functional genomics of carbohydrate utilization pathways from intestinal bacteria. Currently, Dr. Abbott is a Research Scientist for Agriculture and Agri-Food Canada based at the Lethbridge Research Centre and Adjunct Professor at the University of Lethbridge. His research program investigates the mechanisms of complex carbohydrate modification by intestinal bacteria, and is developing applications for carbohydrates in animal agriculture and human intestinal health.
I have contributed to structure-function studies of the following CAZyme Families:
Glycoside Hydrolases
Polysaccharide Lyases
- PL2 Yersinia enterocolitica perplasmic pectate lyase (YePL2A) [5]. Paenibacillus sp. Y412MC10 Cytoplasmic endolytic pectate lyase (PaePL2) [6]. *Family First
Carbohydrate Binding Modules
- CBM6 [8]
- CBM32 Yersinia enterocolitica polygalacturonic acid binding protein (YeCBM32) [9]. Streptococcus pneumoniae EndoD CBM (SpnCBM32) [10].
- CBM35 [11]
- CBM51 Clostridium perfringens blood group binding CBMs (GH95CBM51 and GH98CBM51) [12]
Carbohydrate Esterases
References
<biblio> #Abbott2007a pmid=17397864
- Abbott2007b pmid=17292916
- Abbott2007c pmid=17881361
- Finn2008 pmid=18292090
- Abbott2009a pmid=19181667
- Abbott2009b pmid=19181667
- Abbott2010a pmid=20851883
- Correia2010 pmid=20496884
- Abbott2011 pmid=21505233
- Pluvinage2011 pmid=22078560
- Abbott2012 pmid=22297983
- Pluvinage2013 pmid=23154168
- Abbott2013 pmid=24013861