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Difference between revisions of "User talk:Warren Wakarchuk"
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(Created page with 'Dear Warren, I would like to pay your attention on some data about GH101 family: * You have written, that '[[Glycoside Hydrolase Family 101|the recently solved 3D structure…') |
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I would like to pay your attention on some data about [[GH101]] family: | I would like to pay your attention on some data about [[GH101]] family: | ||
| − | * You have written, that '[[Glycoside Hydrolase Family 101|the recently solved 3D structure of SpGH101 reveals that this protein surprisingly shares some structural features with GH13 alpha-amylases]]', but it is not so surprising. According to PSI-BLAST searches, GH101 is related to [[GH13]], [[GH31]] and many other ( | + | * You have written, that '[[Glycoside Hydrolase Family 101|the recently solved 3D structure of SpGH101 reveals that this protein surprisingly shares some structural features with GH13 alpha-amylases]]', but it is not so surprising. According to PSI-BLAST searches, GH101 is related to [[GH13]], [[GH31]] and many other (β/α)<sub>8</sub>-barrel glycoside hydrolases [1, 2]. |
| − | * According to BLAST searches, the seventh domain of SpGH101 and BlGH101 belongs to [http://pfam.sanger.ac.uk/family?entry=NPCBM_assoc family NEW3] of the functionally uncharacterized domains [ | + | * According to BLAST searches, the seventh domain of SpGH101 and BlGH101 belongs to [http://pfam.sanger.ac.uk/family?entry=NPCBM_assoc family NEW3] of the functionally uncharacterized domains [3]. |
| − | * Six subfamilies have been recognized in GH101 family [ | + | * Six subfamilies have been recognized in GH101 family [4, 5]. |
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1. [http://bioinform.genetika.ru/members/Naumoff/MB2009E.pdf D.G. Naumoff and M. Carreras. 2009. PSI Protein Classifier: a new program automating PSI-BLAST search results. Molecular Biology (Engl Transl). V.43. N.4. P.652-664.] | 1. [http://bioinform.genetika.ru/members/Naumoff/MB2009E.pdf D.G. Naumoff and M. Carreras. 2009. PSI Protein Classifier: a new program automating PSI-BLAST search results. Molecular Biology (Engl Transl). V.43. N.4. P.652-664.] | ||
| − | 2. [http:// | + | 2. [http://www.bionet.nsc.ru/meeting/bgrs2008/BGRS2008_Proceedings.pdf D.G. Naumoff. 2008. The GH31 family of glycoside hydrolases: subfamily structure and evolutionary connections. The Sixth International Conference on Bioinformatics of Genome Regulation and Structure. June 22-28, 2008. Novosibirsk. Russia. P.169.] |
| − | 3. [http:// | + | 3. [http://bioinform.genetika.ru/members/Naumoff/MB2004E.pdf D.G. Naumoff. 2004. Phylogenetic analysis of α-galactosidases of the GH27 family. Molecular Biology (Engl Transl). V.38. N.3. P.388-399.] |
| − | 4. [http://www.springerlink.com/content/5464020317174jx9/fulltext.pdf D.G. Naumoff. 2009. Sequence analysis of endo-α-N-acetylgalactosaminidases (Abstracts of 20th International Symposium on Glycoconjugates Glycans "GLYCO XX", November 29 – December 4, 2009, San Juan, Puerto Rico, USA). Glycoconjugate Journal. V.26. N.7. P.847.] | + | 4. [http://mccmb.genebee.msu.su/2009/MCCMB09_Proceedings.pdf D.G. Naumoff. 2009. Sequence analysis of endo-α-N-acetylgalactosaminidases and their homologues. Proceedings of the International Moscow Conference on Computational Molecular Biology (MCCMB’09). July 20-23, 2009. Moscow. Russia. P.251-252.] |
| + | |||
| + | 5. [http://www.springerlink.com/content/5464020317174jx9/fulltext.pdf D.G. Naumoff. 2009. Sequence analysis of endo-α-N-acetylgalactosaminidases (Abstracts of 20th International Symposium on Glycoconjugates Glycans "GLYCO XX", November 29 – December 4, 2009, San Juan, Puerto Rico, USA). Glycoconjugate Journal. V.26. N.7. P.847.] | ||
--[[User:Daniil Naumoff|Daniil Naumoff]] 11:36, 10 December 2009 (UTC) | --[[User:Daniil Naumoff|Daniil Naumoff]] 11:36, 10 December 2009 (UTC) | ||
Revision as of 23:43, 13 December 2009
Dear Warren,
I would like to pay your attention on some data about GH101 family:
- You have written, that 'the recently solved 3D structure of SpGH101 reveals that this protein surprisingly shares some structural features with GH13 alpha-amylases', but it is not so surprising. According to PSI-BLAST searches, GH101 is related to GH13, GH31 and many other (β/α)8-barrel glycoside hydrolases [1, 2].
- According to BLAST searches, the seventh domain of SpGH101 and BlGH101 belongs to family NEW3 of the functionally uncharacterized domains [3].
- Six subfamilies have been recognized in GH101 family [4, 5].
References:
--Daniil Naumoff 11:36, 10 December 2009 (UTC)