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Difference between revisions of "Glycoside Hydrolase Family 7"

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== Substrate specificities ==
 
== Substrate specificities ==
[[Glycoside hydrolases]] of family 7 cleave β-1,4 glycosidic bonds in cellulose. Several members also show activity on xylan. The substrate specificities found in GH7 are: ''[[endo]]''-1,4-β-glucanase (EC 3.2.1.4); [reducing end-acting] cellobiohydrolase (EC 3.2.1.-) and chitosanase (EC 3.2.1.132).
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Most [[Glycoside hydrolases]] of family 7 cleave β-1,4 glycosidic bonds in cellulose/β-1,4-glucans. Several members also show activity on xylan. The substrate specificities found in GH7 are: ''[[endo]]''-1,4-β-glucanase (EC 3.2.1.4), [reducing end-acting] cellobiohydrolase (EC 3.2.1.-), chitosanase (EC 3.2.1.132) and ''[[endo]]''-1,3-1,4-β-glucanase (EC 3.2.1.73).
 
 
This is an example of how to make references to a journal article <cite>Comfort2007</cite>. (See the References section below). Multiple references can go in the same place like this <cite>Comfort2007 He1999</cite>. You can even cite books using just the ISBN <cite>3</cite>. References that are not in PubMed can be typed in by hand <cite>MikesClassic</cite>.
 
 
 
 
 
 
== Kinetics and Mechanism ==
 
== Kinetics and Mechanism ==
Content is to be added here.
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Family 7 enzymes are [[retaining]] enzymes, as first shown by NMR <cite>Knowles1988</cite> on Cellobiohydrolase I, CBH I, later called Cel7A, from the fungus ''Trichoderma reesei'', which has later been identified as a clonal derivative of ''Hypocrea jecorina''.
 
 
  
 
== Catalytic Residues ==
 
== Catalytic Residues ==
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== Family Firsts ==
 
== Family Firsts ==
;First sterochemistry determination: Cite some reference here, with a ''short'' (1-2 sentence) explanation <cite>Comfort2007</cite>.
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;First sterochemistry determination: ''Hypocrea jecorina'' cellobiohydrolase Cel7A by NMR <cite>Knowles1988</cite>.
 
;First catalytic nucleophile identification: Cite some reference here, with a ''short'' (1-2 sentence) explanation <cite>MikesClassic</cite>.
 
;First catalytic nucleophile identification: Cite some reference here, with a ''short'' (1-2 sentence) explanation <cite>MikesClassic</cite>.
 
;First general acid/base residue identification: Cite some reference here, with a ''short'' (1-2 sentence) explanation <cite>He1999</cite>.
 
;First general acid/base residue identification: Cite some reference here, with a ''short'' (1-2 sentence) explanation <cite>He1999</cite>.
;First 3-D structure: Cite some reference here, with a ''short'' (1-2 sentence) explanation <cite>3</cite>.
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;First 3-D structure: First cellobiohydrolase was ''Hypocrea jecorina'' Cel7A (CBH I; [http://www.rcsb.org/pdb/explore/explore.do?structureId=1CEL PDB 1cel]) <cite>Divne1994</cite>. First ''[[endo]]''-1,4-&beta;-glucanase was Endoglucanase I (EG I, Cel7B) from ''Fusarium oxysporum'' ([http://www.rcsb.org/pdb/explore/explore.do?structureId=1BYH PDB 1byh]) <cite>Sulzenbacher1996</cite>, both by X-ray crystallography.
  
 
== References ==
 
== References ==
 
<biblio>
 
<biblio>
#Comfort2007 pmid=17323919
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#Knowles1988 Jonathan K. C. Knowles, J.K.C., Lehtovaara, P., Murray, M. and Sinnott, M.L. (1988) Stereochemical course of the action of the cellobioside hydrolases I and II of ''Trichoderma reesei''. J. Chem. Soc., Chem. Commun., 1988, 1401-1402. [http://dx.doi.org/10.1039/C39880001401 DOI: 10.1039/C39880001401]
 +
 
 +
#Divne1994 pmid=8036495
 +
 
 +
#Sulzenbacher1996 pmid=8952478
 +
 
 
#He1999 pmid=9312086
 
#He1999 pmid=9312086
 +
 
#3 isbn=978-0-240-52118-3
 
#3 isbn=978-0-240-52118-3
 +
 
#MikesClassic Sinnott, M.L. (1990) Catalytic mechanisms of enzymic glycosyl transfer. Chem. Rev. 90, 1171-1202. [http://dx.doi.org/10.1021/cr00105a006 DOI: 10.1021/cr00105a006]
 
#MikesClassic Sinnott, M.L. (1990) Catalytic mechanisms of enzymic glycosyl transfer. Chem. Rev. 90, 1171-1202. [http://dx.doi.org/10.1021/cr00105a006 DOI: 10.1021/cr00105a006]
  

Revision as of 13:50, 24 February 2010

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Glycoside Hydrolase Family 7
Clan GH-B
Mechanism retaining
Active site residues known
CAZy DB link
http://www.cazy.org/fam/GH7.html


Substrate specificities

Most Glycoside hydrolases of family 7 cleave β-1,4 glycosidic bonds in cellulose/β-1,4-glucans. Several members also show activity on xylan. The substrate specificities found in GH7 are: endo-1,4-β-glucanase (EC 3.2.1.4), [reducing end-acting] cellobiohydrolase (EC 3.2.1.-), chitosanase (EC 3.2.1.132) and endo-1,3-1,4-β-glucanase (EC 3.2.1.73).

Kinetics and Mechanism

Family 7 enzymes are retaining enzymes, as first shown by NMR [1] on Cellobiohydrolase I, CBH I, later called Cel7A, from the fungus Trichoderma reesei, which has later been identified as a clonal derivative of Hypocrea jecorina.

Catalytic Residues

Content is to be added here.


Three-dimensional structures

Content is to be added here.


Family Firsts

First sterochemistry determination
Hypocrea jecorina cellobiohydrolase Cel7A by NMR [1].
First catalytic nucleophile identification
Cite some reference here, with a short (1-2 sentence) explanation [2].
First general acid/base residue identification
Cite some reference here, with a short (1-2 sentence) explanation [3].
First 3-D structure
First cellobiohydrolase was Hypocrea jecorina Cel7A (CBH I; PDB 1cel) [4]. First endo-1,4-β-glucanase was Endoglucanase I (EG I, Cel7B) from Fusarium oxysporum (PDB 1byh) [5], both by X-ray crystallography.

References

  1. Jonathan K. C. Knowles, J.K.C., Lehtovaara, P., Murray, M. and Sinnott, M.L. (1988) Stereochemical course of the action of the cellobioside hydrolases I and II of Trichoderma reesei. J. Chem. Soc., Chem. Commun., 1988, 1401-1402. DOI: 10.1039/C39880001401

    [Knowles1988]
  2. Sinnott, M.L. (1990) Catalytic mechanisms of enzymic glycosyl transfer. Chem. Rev. 90, 1171-1202. DOI: 10.1021/cr00105a006

    [MikesClassic]
  3. He S and Withers SG. (1997). Assignment of sweet almond beta-glucosidase as a family 1 glycosidase and identification of its active site nucleophile. J Biol Chem. 1997;272(40):24864-7. DOI:10.1074/jbc.272.40.24864 | PubMed ID:9312086 [He1999]
  4. Divne C, Ståhlberg J, Reinikainen T, Ruohonen L, Pettersson G, Knowles JK, Teeri TT, and Jones TA. (1994). The three-dimensional crystal structure of the catalytic core of cellobiohydrolase I from Trichoderma reesei. Science. 1994;265(5171):524-8. DOI:10.1126/science.8036495 | PubMed ID:8036495 [Divne1994]
  5. Sulzenbacher G, Driguez H, Henrissat B, Schülein M, and Davies GJ. (1996). Structure of the Fusarium oxysporum endoglucanase I with a nonhydrolyzable substrate analogue: substrate distortion gives rise to the preferred axial orientation for the leaving group. Biochemistry. 1996;35(48):15280-7. DOI:10.1021/bi961946h | PubMed ID:8952478 [Sulzenbacher1996]
  6. [3]

All Medline abstracts: PubMed