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Difference between revisions of "Talk:Glycosyltransferases"
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[[User:Spencer Williams|Spencer Williams]] 13:02, 14 August 2010 (CEST) | [[User:Spencer Williams|Spencer Williams]] 13:02, 14 August 2010 (CEST) | ||
| − | Something wrong with the applet - the second one doesnt seem to call pdb=1bgt, but rather calls the pdb from | + | Something wrong with the applet - the second one doesnt seem to call pdb=1bgt, but rather calls the pdb from the previous script. ---Fixed it! |
| − | [[User:Spencer Williams|Spencer Williams]] | + | [[User:Spencer Williams|Spencer Williams]] 12:39, 15 August 2010 (CEST) |
Revision as of 02:39, 15 August 2010
Jmol
Would like to get Jmol to the point where you can simply paste the code in, along with the pdb code, choose the page location and "voila". I think the default should be:
- ribbon
- buttons to toggle to other views/styles
- slow rotate
- a button to toggle rotate on and off
Spencer Williams 07:06, 14 August 2010 (CEST)
Comment
Sounds good - I suggest looking at Proteopedia as a good example. I'm not convinced about wireframe, since this obscures the fold. Might be better with a combo of cartoon (or ribbon, etc.) and ligands/heteroatoms in ball & stick, lines, etc.
Note that, for technical reasons, I have disabled direct loading of the PDB file via and external URL. This requires using the signed version of the java applet. Since the applet still bears the original signature from the jmol site, this forces the user to answer a pop-up, which is not ideal. The current config requires only that you upload the PDB file to CAZypedia and call that from Jmol. This keeps everything internal.
Harry Brumer 08:59, 14 August 2010 (CEST) Oops, I meant ribbon. I have changed it in my first post.
Spencer Williams 13:02, 14 August 2010 (CEST) Something wrong with the applet - the second one doesnt seem to call pdb=1bgt, but rather calls the pdb from the previous script. ---Fixed it!
Spencer Williams 12:39, 15 August 2010 (CEST)