Auxiliary Activity Family 5

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• Author: ^^^Maria Cleveland^^^ and ^^^Yann Mathieu^^^
• Responsible Curator: ^^^Harry Brumer^^^

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Auxiliary Activity Family AA5
Fold	Seven-bladed β-propeller
Mechanism	Copper Radical Oxidase
Active site residues	known
CAZy DB link
https://www.cazy.org/AA5.html

Substrate Specificities

Enzymes from Auxiliary Activity Family 5 (AA5) are mononuclear copper-radical oxidases (CROs) that perform the two-electron oxidation of substrates using oxygen as the final electron acceptor (EC 1.1.3.-) [1]. AA5 members are further classified into two major subfamilies [2]: Subfamily AA5_1 contains characterized glyoxal oxidases (EC 1.2.3.15) [3]. Subfamily AA5_2 contains galactose 6-oxidases (EC 1.1.3.9), which oxidize the C-6 hydroxyl of diverse galactosides to the corresponding aldehyde [4, 5, 6]. AA5_2 also contains the more recently discovered general alcohol oxidases (EC 1.1.3.13) [6, 7, 8] and aryl alcohol oxidases (EC 1.1.3.7) [9, 10]. The first biochemically characterized member of AA5 was the galactose 6-oxidase from the phytopathogenic fungus Fusarium graminearum (previously known as Polyporus circinatus and Cladobotryum (Dactylium) dendroides [11]), which was originally reported in 1959 following isolation from cultures [12, 13]. Subsequently, the Fusarium graminearum galactose 6-oxidase became the defining member of AA5_2 [2]. The first characterized member of what is now known as AA5_1 is the glyoxal oxidase from Phanerochaete chrysosporium, which was likewise isolated from fungal culture [14].

In contrast to their fungal and bacterial counterparts, plant AA5 members do not fall within the two defined subfamilies. An AA5 enzyme from Arabidopsis thaliana has been demonstrated in vivo to have galactose 6-oxidase activity and promote cell-to-cell adhesion in the seed coat epidermis [15] (see also [16]. Additionally, a Streptomyces lividans enzyme, GlxA, which is distantly related to AA5, has been shown to oxidize glycolaldehyde and a deletion mutant showed a loss of glycan accumulation at hyphal tips [17].

AA5_1

The AA5_1 members are generally known as glyoxal oxidases (EC 1.2.3.15), characterized members of which typically accept a range of simple aldehydes, α-hydroxycarbonyl, and α-dicarbonyl compounds as substrates, with the highest activities observed on glyoxal, methylglyoxal and glycolaldehyde [1, 14, 18, 19, 20]. In contrast, two glyoxal oxidases form Pycnoporus cinnabarinus demonstrated the highest catalytic efficiency on glyoxylic acid [21]. An apparent distinction between the AA5_1 and AA5_2 subfamilies is that while AA5_1 enzymes catalyze the oxidation of aldehydes to carboxylic acids [1], AA5_2 members oxidize primary alcohols to the corresponding aldehyde (and, in some instances, also oxidize the aldehyde to the acid, albeit much more slowly) [4, 22]. Consequently, the oxidation of aldehydes by AA5 CROs has been suggested to proceed through the hydrated, gem-diol species [18].

AA5_2

The archetypal CRO and AA5 member is the Fusarium graminearum galactose 6-oxidase (FgrGalOx), which catalyzes the regioselective oxidation of the C6-hydroxyl group on the monosaccharide galactose (EC 1.3.3.7) [12, 13]. The range of substrates oxidized by FgrGalOx also includes galactosides as methyl beta-galactopyranoside [23], and galactose-containing di-, oligo-, and polysaccharides, including lactose, melibiose, raffinose, galactoxyloglucan, galactomannan and galactoglucomannan [22, 24]. Several other AA5_2 members from Fusarium species, such as those from F. oxysporum [25], F. sambucinum [23], and F. acuminatum [26] have substrate specificities similar to FgrGalOx. The last distinct group of AA5_2 enzymes based on substrate specificity are the raffinose-specific oxidases (EC 1.3.3.-). Other AA5_2 orthologs exhibit specificity for the alpha-galactosyl unit of the di- and trisaccharides mellibiose and raffinose, respectively, over galactose [5, 6]. For many decades since their discovery, galactose 6-oxidase activity was thought to be the defining feature of this family, although a limited ability of FgrGalOx to oxidize non-carbohydrate alcohols has been noted [27, 28]

In 2015, two AA5_2 orthologs from the fungi Colletotrichum graminicola and Colletotrichum gloeosporioides were characterized (CgrAlcOx and CglAlcOx, respectively), which were essentially inactive on galactose and galactosides, but efficiently oxidized the hydroxyl group of diverse aliphatic and aromatic primary alcohols [7]. These enzymes exhibited high catalytic efficiency towards, e.g., n-butan-1-ol, 2,4-hexadiene-1-ol, benzyl alcohol, and cinnamyl alcohol, and were therefore denoted as general alcohol oxidases (EC 1.3.3.13) [7]. Likewise, two AA5_2 members were characterized from the pathogenic fungi Pyricularia oryzae (PorAlcOx) and Colletotrichum higginsianum (ChiAlcOx), which exhibited prominent activity on n-butan-1-ol, ethanol, 1,3-butanediol, and glycerol [8]. Since then, additional AA5_2 enzymes from various fungi have been characterized as general alcohol oxidases, some of which efficiently oxidize both carbohydrate and non-carbohydrate substrates [6]. More specifically, several fungal AA5_2 members, including homologs from Colletotrichum/Glomerella and Fusarium species, have been characterized as aryl alcohol oxidases due to predominant specificities toward substituted benzyl alcohols and 5-hydroxymethylfurfural (HMF) (see EC 1.1.3.7 and EC 1.1.3.47) [6, 9, 10].

The specificity of AA5 CROs has been harnessed for a range of biotechnological applications. The earliest examples include glycoprotein labelling via oxidation of galactosyl residues with FgrGalOx and engineered variants [ADD REFS]. Likewise, FgrGalOx has been utilized for the production of functionalized carbohydrates from biomass sources [29, 30, 31, 32, 33, 34, 35, 36]. The ability of specific AA5 members to oxidize aliphatic and aromatic alcohols to the corresponding aldehydes, including stereoselectively, has biocatalytic applications in chemical production, e.g. for the pharmaceutical and food and fragrance industries [ADD REFS] [37]. Similarly, the ability of CROs to convert HMF into the bi-functional precursors DFF and FDCA can be potentially utilized in the context of bio-polymer manufacturing [38, 39].

Kinetics and Mechanism

Figure 1. Reaction mechanism of copper radical oxidases. A. First half-reaction – oxidation of substrate. B. Second-half reaction – regeneration of active site radical. PT – proton transfer, HAT – hydrogen atom transfer, ET – electron transfer. This figure is reproduced from [7] (CC BY 4.0).

AA5 enzymes oxidize their substrate with concurrent reduction of oxygen to hydrogen peroxide in a two-electron process mediated through a free-radical-coupled copper complex via the presence of a redox active Tyr-Cys cofactor. In AA5_2 the Tyr-Cys cofactor exhibits an unusually low reduction potential (+275 mV) [40, 41, 42] compared to unmodified tyrosine in solution (> +800 mV) or in other enzymatic systems [43]. Several factors could contribute to this phenomenon by increasing the stability of the protein free radical including π-stacking with aromatic residues and the electron donating effect of the thioether linkage [4, 44, 45]. In contrast, AA5_1 have a reduction potential around +640 mV [18] which could explain the different oxidizing power of these two subfamilies [1, 42]. One reason for the higher reduction potential of glyoxal oxidases could be subtitution of the secondary shell amino acid Trp in AA5_2 with a His in AA5_1 [1, 42]. In the archetypal AA5_2 member, FgrGalOx, the Trp290His substitution increased the reduction potential of the resulting enzyme from +400 mV to +730 mV [46]; however, it also decreased the catalytic efficiency by 1000-fold [47] and affected the stability of the [Cu2+ Tyr·] metallo-radical complex at neutral pH [48]. CgrAlcOx and CgrAAO have been speculated to have a lower reduction potential than FgrGalOx due to their secondary shell amino acid substitutions (Phe in CgrAlcOx and Tyr in CgrAAO) [7, 9].

A substantial amount of spectroscopic evidence has supported a ping-pong mechanism for AA5 enzymes [1, 4, 18, 19, 47, 49, 50, 51], including some theoretical and biomimetic models possessing mechanistic similarities [52, 53]. The reaction progresses through a two-step process: the first half-reaction performs the oxidation of the substrate, while the second half-reaction regenerates the oxidation state of the active-site copper with concurrent reduction of molecular oxygen to hydrogen peroxide. Each half reaction consists of three steps: proton transfer (PT), hydrogen atom transfer (HAT), and an electron transfer (ET).

Other work, focused on optimizing the industrial potential of AA5 enzymes, has shown that AA5_2 enzymes have increased activity with the addition of peroxidases (horse-radish peroxidase and catalase) and small molecule activators (potassium ferricyanide and magnesium (III) acetate) [54, 55, 56, 57, 58].

Catalytic Residues

Figure 2. Active site residues of copper radical oxidases FgrGalOx, Cu ion in orange (PDB ID 1GOF).

The redox-active center of AA5 oxidases comprises a copper ion that is stabilized by two tyrosines and two histidines (in FgrGalOx, these are Tyr272, Tyr495, His496, His581), resulting in a distorted square pyramidal geometry [4, 18, 19, 49]. Based on the copper coordination environment, AA5 proteins are type 2 “non-blue” copper category due to the nitrogen and oxygen ligands [59]. The unique feature of AA5 enzymes is the covalently linked equatorial tyrosine with an adjacent cysteine by a thioether bond (Tyr 272 and Cys 228 in the archetypal FgrGalOx) [59, 60]. The thioether linkage forms spontaneously in the presence of copper and has been shown to stabilize the radical though delocalization that forms on the equatorial tyrosine during catalysis [61].

Another important feature of AA5 enzymes is a secondary shell amino acid that is located on top of the tyrosine-cysteine cofactor. It has been speculated to be critical in determining the substrate specificity, radical stability and redox activity by hydrogen bonding, delocalization and/or by protecting the thioether bond from solvent [1, 3, 4, 45]. This residue in AA5_1, based on sequence alignments, has been conserved as a histidine [1], while characterized AA5_2 enzymes have an aromatic residue at this position: a tryptophan in galactose oxidases (W290 in FgrGalOx) [6, 45], a phenylalanine in the Colletotrichum aliphatic alcohol oxidases [7], whereas a tyrosine is present in the raffinose oxidases [5, 6] and aryl alcohol oxidase from Colletotrichum graminicola [9]. Furthermore, an AA5 enzyme from Streptomyces lividans with activity on glycolaldehyde possesses a tryptophan as the stacking secondary shell residue whose indole ring is oriented differently compared to FgrGalOx, which may affect the substrate specificity [17, 62].

Three-dimensional Structures

Figure 3. Crystal structure of copper radical oxidases. A. FgrGalOx (PDB ID 1GOF), Copper ion in orange and B. CgrAlcOx (PDB ID 5C86), Copper ion in grey. This figure is reproduced from [7] (CC BY 4.0).

AA5s share a seven-bladed β-propeller fold [7, 9, 59] for the catalytic domain containing the active site. The archetypal FgrGalOx contains three domains: domain 1 has a “β sandwich” structure identified as a carbohydrate binding module (CBM32) with affinity for galactose, domain 2 is the catalytic domain and domain 3 is the smallest, which forms a hydrogen bonding network to stabilize domain 2 [59]. Other characterized AA5_2 enzymes from Fusarium species contain CBM32 [6, 23, 25, 63], even though some do not display canonical galactose oxidase activity (ex. FgrAAO and FoxAAO) [6, 10]. In contrast, CgrAlcOx, CglAlcOx and ChiAlcOx do not possess any CBM [7, 8], while CgrAAO and CgrRafOx have a PAN domain present instead [5, 9]. PorAlcOx contained a WSC domain that was able to bind xylans and fungal chitin/β-1,3-glucan, implicating the domain's involvement in enzyme anchoring on the plant surface [8]. In addition, the fusion of a galactose oxidase with a CBM29 has shown to increase the catalytic efficiency of the construct on galactose-containing hemicelluloses compared to WT [64].

Family Firsts

First AA5_1 enzyme discovered

The glyoxal oxidase from Phanerochaete chrysosporium discovered in 1987 [14].

First AA5_2 enzyme discovered

The archetypal galactose-6 oxidase from Fusarium graminearum (FgrGalOx) discovered in 1959 [12].

Copper requirement confirmed

While this first report already established FgrGalOx as a metalloenzyme; its copper requirement was later confirmed [65].

First 3-D structure

The first crystallography structure of AA5 was of the archetypal FgrGalOx in 1991 [60].

References

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