CAZypedia needs your help!
We have many unassigned pages in need of Authors and Responsible Curators. See a page that's out-of-date and just needs a touch-up? - You are also welcome to become a CAZypedian. Here's how.
Scientists at all career stages, including students, are welcome to contribute.
Learn more about CAZypedia's misson here and in this article.
Totally new to the CAZy classification? Read this first.

User talk:Warren Wakarchuk

From CAZypedia

Revision as of 23:43, 13 December 2009 by Daniil Naumoff (talk | contribs)

(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)

Jump to navigation Jump to search

Dear Warren,

I would like to pay your attention on some data about GH101 family:

You have written, that 'the recently solved 3D structure of SpGH101 reveals that this protein surprisingly shares some structural features with GH13 alpha-amylases', but it is not so surprising. According to PSI-BLAST searches, GH101 is related to GH13, GH31 and many other (β/α)₈-barrel glycoside hydrolases [1, 2].
According to BLAST searches, the seventh domain of SpGH101 and BlGH101 belongs to family NEW3 of the functionally uncharacterized domains [3].
Six subfamilies have been recognized in GH101 family [4, 5].

References:

1. D.G. Naumoff and M. Carreras. 2009. PSI Protein Classifier: a new program automating PSI-BLAST search results. Molecular Biology (Engl Transl). V.43. N.4. P.652-664.

2. D.G. Naumoff. 2008. The GH31 family of glycoside hydrolases: subfamily structure and evolutionary connections. The Sixth International Conference on Bioinformatics of Genome Regulation and Structure. June 22-28, 2008. Novosibirsk. Russia. P.169.

3. D.G. Naumoff. 2004. Phylogenetic analysis of α-galactosidases of the GH27 family. Molecular Biology (Engl Transl). V.38. N.3. P.388-399.

4. D.G. Naumoff. 2009. Sequence analysis of endo-α-N-acetylgalactosaminidases and their homologues. Proceedings of the International Moscow Conference on Computational Molecular Biology (MCCMB’09). July 20-23, 2009. Moscow. Russia. P.251-252.

5. D.G. Naumoff. 2009. Sequence analysis of endo-α-N-acetylgalactosaminidases (Abstracts of 20th International Symposium on Glycoconjugates Glycans "GLYCO XX", November 29 – December 4, 2009, San Juan, Puerto Rico, USA). Glycoconjugate Journal. V.26. N.7. P.847.

--Daniil Naumoff 11:36, 10 December 2009 (UTC)

Retrieved from "http://www.cazypedia.org/index.php?title=User_talk:Warren_Wakarchuk&oldid=3029"