Template:CBMFamilyPage

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• Author: ^^^Alicia Lammerts van Bueren^^^
• Responsible Curator: ^^^Alicia Lammerts van Bueren^^^

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Page content has yet to be added. In the meantime, please see these references for an essential introduction to the CAZy classification system: [1, 2]. CBMs, in particular, have been extensively reviewed [3, 4, 5, 6].

Ligand specificities

Mention here all major ligand specificities that are found within a given family (also plant or mammalian origin). Certain linkages and promiscuity would also be mentioned here (such as BhCBM6 binding xylobiose and laminarihexaose).

Structural Features

Fold

Include here Type A, B, or C, fold (beta trefoil, beta sandwich most likely),

Properties of ligand binding

What face of the CBM is the binding pocket located? Side or apex? Include examples pdb codes. important residues for binding (W, Y, F, subsites). Metal ion dependent?

Functionalities

(delete a subheading when appropriate)

Functional role of CBM

list here such things like targeting, disruptive, anchoring, proximity/position on substrate.

Most Common Associated Catalytic Activity

list here GH families, or if family is independent of any catalytic module

Additional Associated Modules

Examples: Do they exist in duplicate? With another CBM family? FNIII, cohesin, dockerins, etc.

Novel Applications

Include here if CBM has been used to modify another enzyme, or if a CBM was used to label plant/mammalian tissues? Etc.

Family Firsts

First Identified

insert text here

First Structural Characterization

insert text here

References

1. Davies, G.J. and Sinnott, M.L. (2008) Sorting the diverse: the sequence-based classifications of carbohydrate-active enzymes. Biochem. J. (BJ Classic Paper, online only). DOI: 10.1042/BJ20080382

2. Cantarel BL, Coutinho PM, Rancurel C, Bernard T, Lombard V, and Henrissat B. (2009). The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics. Nucleic Acids Res. 2009;37(Database issue):D233-8. DOI:10.1093/nar/gkn663 |
3. Boraston AB, Bolam DN, Gilbert HJ, and Davies GJ. (2004). Carbohydrate-binding modules: fine-tuning polysaccharide recognition. Biochem J. 2004;382(Pt 3):769-81. DOI:10.1042/BJ20040892 |
4. Hashimoto H (2006). Recent structural studies of carbohydrate-binding modules. Cell Mol Life Sci. 2006;63(24):2954-67. DOI:10.1007/s00018-006-6195-3 |
5. Shoseyov O, Shani Z, and Levy I. (2006). Carbohydrate binding modules: biochemical properties and novel applications. Microbiol Mol Biol Rev. 2006;70(2):283-95. DOI:10.1128/MMBR.00028-05 |
6. Guillén D, Sánchez S, and Rodríguez-Sanoja R. (2010). Carbohydrate-binding domains: multiplicity of biological roles. Appl Microbiol Biotechnol. 2010;85(5):1241-9. DOI:10.1007/s00253-009-2331-y |

[[Category:Carbohydrate Binding Module Families|CBMnnn]]