CAZypedia needs your help!
We have many unassigned pages in need of Authors and Responsible Curators. See a page that's out-of-date and just needs a touch-up? - You are also welcome to become a CAZypedian. Here's how.
Scientists at all career stages, including students, are welcome to contribute.
Learn more about CAZypedia's misson here and in this article.
Totally new to the CAZy classification? Read this first.
Difference between revisions of "Lexicon"
Harry Brumer (talk | contribs) (dropped navigation block and implemented standard TOC) |
Harry Brumer (talk | contribs) |
||
| (3 intermediate revisions by 2 users not shown) | |||
| Line 9: | Line 9: | ||
|category=Definitions and explanations | |category=Definitions and explanations | ||
|category=Curator approved | |category=Curator approved | ||
| + | |mode=userformat | ||
|resultsheader=\nThere are currently %PAGES% [[:Category:Curator approved|Curator approved]] Lexicon pages in ''CAZypedia''.\n | |resultsheader=\nThere are currently %PAGES% [[:Category:Curator approved|Curator approved]] Lexicon pages in ''CAZypedia''.\n | ||
|noresultsheader=\nThere are currently no pages in this category.\n | |noresultsheader=\nThere are currently no pages in this category.\n | ||
| + | |||
| + | |redirects=exclude | ||
| + | |||
| + | |allowcachedresults=no | ||
| + | }} | ||
| + | <div style="-webkit-column-count:3;column-count:3;"> | ||
| + | {{#dpl: | ||
| + | |category=Definitions and explanations | ||
| + | |category=Curator approved | ||
|ordermethod=sortkey | |ordermethod=sortkey | ||
|order=ascending | |order=ascending | ||
| + | |redirects=exclude | ||
|columns=3 | |columns=3 | ||
|rowcolformat=width=100% | |rowcolformat=width=100% | ||
| − | |||
|allowcachedresults=no | |allowcachedresults=no | ||
}} | }} | ||
| − | + | </div> | |
== Under construction == | == Under construction == | ||
| Line 27: | Line 37: | ||
|category=Definitions and explanations | |category=Definitions and explanations | ||
|category=Under construction | |category=Under construction | ||
| + | |mode=userformat | ||
|resultsheader=\nThere are currently %PAGES% Lexicon pages [[:Category:Under construction|under construction]] in ''CAZypedia''.\n | |resultsheader=\nThere are currently %PAGES% Lexicon pages [[:Category:Under construction|under construction]] in ''CAZypedia''.\n | ||
|noresultsheader=\nThere are currently no pages in this category.\n | |noresultsheader=\nThere are currently no pages in this category.\n | ||
| + | |allowcachedresults=no | ||
| + | }} | ||
| + | <div style="-webkit-column-count:3;column-count:3;"> | ||
| + | {{#dpl: | ||
| + | |category=Definitions and explanations | ||
| + | |category=Under construction | ||
|ordermethod=sortkey | |ordermethod=sortkey | ||
|order=ascending | |order=ascending | ||
| + | |redirects=exclude | ||
|columns=3 | |columns=3 | ||
|rowcolformat=width=100% | |rowcolformat=width=100% | ||
| − | |||
|allowcachedresults=no | |allowcachedresults=no | ||
}} | }} | ||
| − | + | </div> | |
== References == | == References == | ||
Latest revision as of 17:43, 13 December 2021
The entries listed below comprise a lexicon of key terms and concepts in CAZypedia. Specifically, the aim of the lexicon is to provide a precise definition of various specialized terms unique to carbohydrate chemistry [1, 2, 3], as well as a general overview of the catalytic mechanisms of the major carbohydrate-active enzyme (CAZyme) classes [4, 5, 6, 7, 8].
Curator Approved
These pages have been approved by the Responsible Curator as essentially complete. CAZypedia is a living document, so further improvement of these pages is still possible; please see the individual pages for more information.
There are currently 24 Curator approved Lexicon pages in CAZypedia.
- Absolute configuration (D/L nomenclature)
- Alpha-glucan lyases
- Anomeric centre (alpha and beta)
- Carbohydrate Bioengineering Meetings
- Carbohydrate-active enzymes
- Carbohydrate-binding modules
- Catalytic nucleophile
- Cellulosome
- Conformational itinerary
- Conformational nomenclature
- General acid/base
- Glycoside hydrolases
- Glycosyltransferases
- Oxazolinium ion
- Oxocarbenium ion
- Phosphorylases
- Polysaccharide epimerases
- Reaction intermediate
- Sequence-based classification
- Sub-site nomenclature
- Surface Binding Site
- Syn/anti lateral protonation
- Transglycosylases
- Transition state
Under construction
These pages are currently under construction in CAZypedia. As such, the Responsible Curator has deemed that the page's content is not quite up to CAZypedia's standards for full public consumption. All information on these pages should therefore be considered to be under revision and may be subject to major changes.
There are currently 1 Lexicon pages under construction in CAZypedia.
References
- Robert V. Stick and Spencer J. Williams. (2009) Carbohydrates. Elsevier Science.
- Michael Sinnott. (2007) Carbohydrate Chemistry and Biochemistry. Royal Society of Chemistry.
-
Sinnott, M.L. (1990) Catalytic mechanisms of enzymic glycosyl transfer. Chem. Rev. 90, 1171-1202. DOI: 10.1021/cr00105a006
- McCarter JD and Withers SG. (1994). Mechanisms of enzymatic glycoside hydrolysis. Curr Opin Struct Biol. 1994;4(6):885-92. DOI:10.1016/0959-440x(94)90271-2 |
- Yip VL and Withers SG. (2006). Breakdown of oligosaccharides by the process of elimination. Curr Opin Chem Biol. 2006;10(2):147-55. DOI:10.1016/j.cbpa.2006.02.005 |
- Vocadlo DJ and Davies GJ. (2008). Mechanistic insights into glycosidase chemistry. Curr Opin Chem Biol. 2008;12(5):539-55. DOI:10.1016/j.cbpa.2008.05.010 |
- Lairson LL, Henrissat B, Davies GJ, and Withers SG. (2008). Glycosyltransferases: structures, functions, and mechanisms. Annu Rev Biochem. 2008;77:521-55. DOI:10.1146/annurev.biochem.76.061005.092322 |