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Difference between revisions of "Lexicon"
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| + | The pages listed below comprise a lexicon of key terms and concepts in ''CAZypedia''. Specifically, the aim of the lexicon is to provide a precise definition of various specialized terms unique to carbohydrate chemistry <cite>1 2</cite>, as well as a general overview of the catalytic mechanisms of the major CAZyme classes <cite>3 4 5 Lairson2008</cite>. | ||
| − | < | + | <blockquote class="toccolours" style="float:none; padding: 10px 15px 10px 15px; display:table;"> |
| − | + | ''Jump to:'' [[#Curator Approved|Curator Approved Lexicon pages]] | [[#Under construction|Lexicon pages under construction]] | |
| − | + | </blockquote> | |
| − | |||
| − | | | ||
| − | | | ||
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| − | |||
| − | | | + | == Curator Approved == |
| − | | | + | {{#dpl: |
| − | | | + | |category=Definitions and explanations |
| − | | | + | |category=Curator approved |
| + | |resultsheader=\nThere are currently %TOTALPAGES% Curator Approved<sup><small>([[:Category:Curator approved|definition]])</small></sup> Glycoside Hydrolase Family pages in ''CAZypedia''.\n\n | ||
| + | |columns=3 | ||
| + | |rowcolformat=width=100% | ||
| + | |ordermethod=sortkey | ||
| + | |order=ascending | ||
| + | |allowcachedresults=yes | ||
| + | }} | ||
| − | | | + | == Under construction == |
| − | | | + | {{#dpl: |
| − | | | + | |category=Definitions and explanations |
| − | | | + | |category=Under construction |
| − | |} | + | |resultsheader=\nThere are currently %TOTALPAGES% Glycoside Hydrolase Family pages under construction<sup><small>([[:Category:Under construction|definition]])</small></sup> in ''CAZypedia''.\n |
| − | < | + | |columns=3 |
| − | --> | + | |rowcolformat=width=100% |
| + | |ordermethod=sortkey | ||
| + | |order=ascending | ||
| + | |allowcachedresults=yes | ||
| + | }} | ||
| + | |||
| + | |||
| + | ---- | ||
| + | === References === | ||
| + | <biblio> | ||
| + | #1 isbn=978-0-240-52118-3 | ||
| + | #2 isbn=0471953431 | ||
| + | #3 pmid=7712292 | ||
| + | #4 pmid=18558099 | ||
| + | #5 Sinnott, M.L. (1990) Catalytic mechanisms of enzymic glycosyl transfer. Chem. Rev. 90, 1171-1202. [http://dx.doi.org/10.1021/cr00105a006 DOI: 10.1021/cr00105a006] | ||
| + | #Lairson2008 pmid=18518825 | ||
| + | </biblio> | ||
Revision as of 06:14, 28 May 2010
The pages listed below comprise a lexicon of key terms and concepts in CAZypedia. Specifically, the aim of the lexicon is to provide a precise definition of various specialized terms unique to carbohydrate chemistry [1, 2], as well as a general overview of the catalytic mechanisms of the major CAZyme classes [3, 4, 5, 6].
Jump to: Curator Approved Lexicon pages | Lexicon pages under construction
Curator Approved
There are currently 24 Curator Approved(definition) Glycoside Hydrolase Family pages in CAZypedia.
- Absolute configuration (D/L nomenclature)
- Alpha-glucan lyases
- Anomeric centre (alpha and beta)
- Carbohydrate Bioengineering Meetings
- Carbohydrate-active enzymes
- Carbohydrate-binding modules
- Catalytic nucleophile
- Cellulosome
- Conformational itinerary
- Conformational nomenclature
- General acid/base
- Glycoside hydrolases
- Glycosyltransferases
- Oxazolinium ion
- Oxocarbenium ion
- Phosphorylases
- Polysaccharide epimerases
- Reaction intermediate
- Sequence-based classification
- Sub-site nomenclature
- Surface Binding Site
- Syn/anti lateral protonation
- Transglycosylases
- Transition state
Under construction
There are currently 1 Glycoside Hydrolase Family pages under construction(definition) in CAZypedia.
References
- McCarter JD and Withers SG. (1994). Mechanisms of enzymatic glycoside hydrolysis. Curr Opin Struct Biol. 1994;4(6):885-92. DOI:10.1016/0959-440x(94)90271-2 |
- Vocadlo DJ and Davies GJ. (2008). Mechanistic insights into glycosidase chemistry. Curr Opin Chem Biol. 2008;12(5):539-55. DOI:10.1016/j.cbpa.2008.05.010 |
-
Sinnott, M.L. (1990) Catalytic mechanisms of enzymic glycosyl transfer. Chem. Rev. 90, 1171-1202. DOI: 10.1021/cr00105a006
- Lairson LL, Henrissat B, Davies GJ, and Withers SG. (2008). Glycosyltransferases: structures, functions, and mechanisms. Annu Rev Biochem. 2008;77:521-55. DOI:10.1146/annurev.biochem.76.061005.092322 |