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Difference between revisions of "Glycoside Hydrolase Family 73"

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           Normal.dotm  0  0  1  123  705  CNRS  5  1  865  12.0        0  false    21    18 pt  18 pt  0  0    false  false  false
 
           Normal.dotm  0  0  1  123  705  CNRS  5  1  865  12.0        0  false    21    18 pt  18 pt  0  0    false  false  false
  
Two crystal structure of GH73 are available and have been coincidently reported, FlgJ from ''Sphingomonas sp.'' (SPH1045-C) <cite>1</cite> and Auto a virulence associated peptigoglycan hydrolase from ''Listeria monocytogenes'' <cite>2</cite>. A structure for a catalytic mutant (E185A) of FlgJ has been solved by Maruyama et al <cite>3</cite> but doesn’t show any conformational changes. The two GH73 show the same fold, with two subdomains consisting of a β-lobe and an α-lobe that together create an extended substrate binding groove. With a typical lysozyme (α+β) fold, the catalytic domain of Auto is structurally related to the catalytic domain of Slt70 from ''E. coli''<cite>5</cite>, the family [[GH19]] chitinases and goose egg-white lysozyme (GEWL, [[GH23]])<cite>4</cite>. FlgJ is structurally related to a peptidoglycan degrading enzyme from the bacteriophage phi 29 <cite>6</cite> and also to family [[GH22]] and [[GH23]] lysozymes.
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Two crystal structure of GH73 are available and have been coincidently reported, FlgJ from ''Sphingomonas sp.'' (SPH1045-C) <cite>1</cite> and Auto a virulence associated peptigoglycan hydrolase from ''Listeria monocytogenes'' <cite>2</cite>. A structure for a catalytic mutant (E185A) of FlgJ has been solved by Maruyama et al <cite>3</cite> but doesn’t show any conformational changes. The two GH73 show the same fold, with two subdomains consisting of a β-lobe and an α-lobe that together create an extended substrate binding groove. With a typical lysozyme (α+β) fold, the catalytic domain of Auto is structurally related to the catalytic domain of Slt70 from ''E. coli'' <cite>5</cite>, the family [[GH19]] chitinases and goose egg-white lysozyme (GEWL, [[GH23]])<cite>4</cite>. FlgJ is structurally related to a peptidoglycan degrading enzyme from the bacteriophage phi 29 <cite>6</cite> and also to family [[GH22]] and [[GH23]] lysozymes.
  
  
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== References ==
 
== References ==
 
<biblio>
 
<biblio>
#Comfort2007 pmid=17323919
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#1 pmid=19351587
#He1999 pmid=9312086
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#2 pmid=
#StickWilliams isbn=978-0-240-52118-3
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#3 pmid=20586063
#Sinnott1990 Sinnott, M.L. (1990) Catalytic mechanisms of enzymic glycosyl transfer. Chem. Rev. 90, 1171-1202. [http://dx.doi.org/10.1021/cr00105a006 DOI: 10.1021/cr00105a006]
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#4 pmid=
 +
#5 pmid=
 +
#6 pmid=18606992
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#7 pmid=
 
</biblio>
 
</biblio>
  
  
 
[[Category:Glycoside Hydrolase Families|GH073]]
 
[[Category:Glycoside Hydrolase Families|GH073]]

Revision as of 00:51, 21 July 2010

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Glycoside Hydrolase Family GH73
Clan none, α+β "lysozyme fold"
Mechanism not known
Active site residues partially known
CAZy DB link
https://www.cazy.org/GH73.html


Substrate specificities

Content is to be added here.

This is an example of how to make references to a journal article [1]. (See the References section below). Multiple references can go in the same place like this [1, 2]. You can even cite books using just the ISBN [3]. References that are not in PubMed can be typed in by hand [4].


Kinetics and Mechanism

Content is to be added here.


Catalytic Residues

Content is to be added here.


Three-dimensional structures

         Normal.dotm  0  0  1  123  705  CNRS  5  1  865  12.0         0  false    21    18 pt  18 pt  0  0    false  false  false

Two crystal structure of GH73 are available and have been coincidently reported, FlgJ from Sphingomonas sp. (SPH1045-C) [5] and Auto a virulence associated peptigoglycan hydrolase from Listeria monocytogenes [6]. A structure for a catalytic mutant (E185A) of FlgJ has been solved by Maruyama et al [7] but doesn’t show any conformational changes. The two GH73 show the same fold, with two subdomains consisting of a β-lobe and an α-lobe that together create an extended substrate binding groove. With a typical lysozyme (α+β) fold, the catalytic domain of Auto is structurally related to the catalytic domain of Slt70 from E. coli [8], the family GH19 chitinases and goose egg-white lysozyme (GEWL, GH23)[9]. FlgJ is structurally related to a peptidoglycan degrading enzyme from the bacteriophage phi 29 [10] and also to family GH22 and GH23 lysozymes.


Family Firsts

First stereochemistry determination
Cite some reference here, with a short (1-2 sentence) explanation [1].
First catalytic nucleophile identification
Cite some reference here, with a short (1-2 sentence) explanation [4].
First general acid/base residue identification
Cite some reference here, with a short (1-2 sentence) explanation [2].
First 3-D structure
Cite some reference here, with a short (1-2 sentence) explanation [3].

References

  1. Hashimoto W, Ochiai A, Momma K, Itoh T, Mikami B, Maruyama Y, and Murata K. (2009). Crystal structure of the glycosidase family 73 peptidoglycan hydrolase FlgJ. Biochem Biophys Res Commun. 2009;381(1):16-21. DOI:10.1016/j.bbrc.2009.01.186 | PubMed ID:19351587 [1]
  2. pmid=

    [2]
  3. Maruyama Y, Ochiai A, Itoh T, Mikami B, Hashimoto W, and Murata K. (2010). Mutational studies of the peptidoglycan hydrolase FlgJ of Sphingomonas sp. strain A1. J Basic Microbiol. 2010;50(4):311-7. DOI:10.1002/jobm.200900249 | PubMed ID:20586063 [3]
  4. pmid=

    [5]
  5. pmid=

    [4]
  6. Xiang Y, Morais MC, Cohen DN, Bowman VD, Anderson DL, and Rossmann MG. (2008). Crystal and cryoEM structural studies of a cell wall degrading enzyme in the bacteriophage phi29 tail. Proc Natl Acad Sci U S A. 2008;105(28):9552-7. DOI:10.1073/pnas.0803787105 | PubMed ID:18606992 [6]
  7. pmid=

    [7]

All Medline abstracts: PubMed