Difference between revisions of "User talk:Harry Brumer"

The navigation sidebar settings: MediaWiki:Sidebar
The boilerplate text automatically inserted by Preloader.php upon new page creation in the main namespace: Template:Boilerplate
MediaWiki sysadmin Hub: http://www.mediawiki.org/wiki/Sysadmin_hub
Redirect code: #redirect [[Glycoside Hydrolase Family 16]]

Some useful configuration pages

Sitenotice - for adding info to every page

MediaWiki:Sitenotice

Sitesubtitle - Edited, not sure of the effect...

MediaWiki:Sitesubtitle

Some useful extensions

Boilerplate extension - might be useful for creating new page templates

http://www.mediawiki.org/wiki/Extension:Boilerplate http://www.mediawiki.org/wiki/Extension:Preloader

Handle refs. with Biblio:

http://openwetware.org/wiki/Wikiomics:Biblio

some templates from wikipedia

http://en.wikipedia.org/wiki/Wikipedia:Template_messages

one thing that is semi ugly is that your login name appears at the top of your page or in the list of contributors (for instance User:HBrumer3 or User:Bernie); wouldn't it be nicer if the full real name of people would appear just like on the Board of Curators' page with Harry Brumer or Bernard Henrissat ?

Useful icons gallery

http://commons.wikimedia.org/wiki/User:Ipatrol/Galleries/Icons

http://commons.wikimedia.org/wiki/User:Rocket000/Useful_icon_gallery

Log

This section is a little Mediawiki maintenance log, which might become it's own page some day.

Started 02 September 2009.

UserContactLinks extended syntax extension

http://www.mediawiki.org/wiki/Extension:User_Contact_Links
Allows replacement of "[[:User:username|full name]]" with "(3 tildes)User Name(3 tildes)", where User Name can be:
- wiki username
- user full name (first space last)
- last name of the user
- partial match of any part of user full name
Had to slightly edit both PHP files to break-up (3 tildes)User Name(3 tildes) to "^^^user^^ ^" in description; this was resulting in "incorrect user" being shown on Special:Version.

Harry Brumer 07:59, 2 September 2009 (UTC)

Implemented ContactPage extension

http://www.mediawiki.org/wiki/Extension:ContactPage
Gives world-accessible contact form: Special:Contact
Took some tweaking to get it to work:
- Line 125 in SpecialContact.php ($captcha = ConfirmEditHooks::getInstance();) broke Mediawiki
- Upgrading to ConfirmEdit-MW1.15-r50221 broke reCaptcha, e.g. on user signup page.
- Fixed by commenting out offending Line 125
  - All seems OK
  - reCaptcha works on all pages, including Special:Contact (must not be logged in as sysop to see it) and user signup page
Also hacked ConfirmEdit.php to put "contactpage" captcha trigger there, instead of in LocalSettings.php (left a comment in the latter to that effect).

Harry Brumer 15:43, 2 September 2009 (UTC)

Playing around with image thumbnail settings

see http://www.mediawiki.org/wiki/Image_thumbnailing
$wgUseImageMagick turned off in LocalSettings.php
- Was generating errors on Special:NewFiles (ImageMagick not installed...)
Not clear if $wgUseImageResize should be used or not in MW 1.15
- Unclear info at http://www.mediawiki.org/wiki/Manual:$wgUseImageResize
- Now uncommented in LocalSettings.php, maybe some effect with .gif (see GH11).

Harry Brumer 14:12, 7 September 2009 (UTC)

Implemented Extension:Cite/Special:Cite.php

Generates full citation information for each page via a toolbox link
see http://www.mediawiki.org/wiki/Extension:Cite/Special:Cite.php
- Mediawiki:Cite text created from cite_text file in extension directory (contains citation formats & layout)

Harry Brumer 13:12, 5 November 2009 (UTC)

"Date retrieved" code doesn't seem to be working right. Tried to implement a solution Wikipedia is running using the ParserFunction extension and the time function, but ParserFunction seems to break the wiki. Also, had to disable MassEmailer due to some weird conflict that generated an error trail when saving Mediawiki:Cite text.

Harry Brumer 15:13, 5 November 2009 (UTC)

New version (r50579) of Extension:ParserFunctions added

Fixed earlier problem with ParserFunctions breaking the wiki
Allow use of time function in Mediawiki:Cite text to give the current time in the "Date retrieved" line.

Harry Brumer 09:39, 6 November 2009 (UTC)

Pages in Category test

Might be something for MainPage, although claimed to be "expensive": http://www.mediawiki.org/wiki/Help:Magic_words
See also http://www.mediawiki.org/wiki/Manual:$wgExpensiveParserFunctionLimit
- Now containing 189 GH family pages and 33 lexicon pages.

Harry Brumer 10:35, 8 November 2009 (UTC)

Stopped implementing Extension:EditUser

http://www.mediawiki.org/wiki/Extension:EditUser
- On ice for the moment.
- ChangePassword mainentance script will probably do what I need for now. http://www.mediawiki.org/wiki/Manual:ChangePassword.php

Harry Brumer 13:29, 8 November 2009 (UTC)

Implemented Extension:LookupUser

http://www.mediawiki.org/wiki/Extension:LookupUser
Gives SpecialPage Special:LookupUser showing user prefs., including email address.
Currently accessible only to Bureaucrat group only (LocalSettings)

Harry Brumer 13:48, 8 November 2009 (UTC)

Implemented Template:Smallcaps

Wraps some markup for simple implementation of small caps, e.g. for use in d/l sugar nomenclature.
NOTE (from the [http://en.wikipedia.org/wiki/Template:Smallcaps/doc Smallcaps template doc page):

Your source text is not altered in the output, only the way it is displayed on the screen: a copy-paste of the text will give the small caps sections in their original form; similarly, an older or non-CSS browser will only display the original text on screen. This can be seen as a problem, solved with (the sc template).

Code

{{Smallcaps|Your Text in 4004 bc}}

Displayed

Your Text in 4004 bc

Pasted

Your Text in 4004 bc

So, the code needs to look like this: {{Smallcaps|d}}, to get d. {{Smallcaps|D}} gives D.

Harry Brumer 16:27, 6 January 2010 (UTC)

Tested Extension:DynamicPageList (a.k.a. Intersection)

Allows showing intersections of Categories
http://en.wikinews.org/wiki/Wikinews:DynamicPageList
- Worked OK but could only give simple linear lists.
- Was difficult to figure out how to sort alphabetically given limited documentation, had to read the code to find the "categorysortkey" option.
- e.g., this sort of worked:

<DynamicPageList>
category=Glycoside Hydrolase Families
category=Curator approved
ordermethod=categorysortkey
order=ascending
mode=none
</DynamicPageList>

However, not really pretty. Extension disabled.
Might use DynamicPageList2: http://www.mediawiki.org/wiki/Extension:DynamicPageList_(third-party)

Harry Brumer 12:00, 23 January 2010 (UTC)

Implementing Extension:DynamicPageList2

Allows showing intersections of Categories, plus many page analysis features.
Essentially supercedes Extension:DynamicPageList
http://www.mediawiki.org/wiki/Extension:DynamicPageList_(third-party)
http://semeb.com/dpldemo/index.php?title=Extension_DPL

Examples

Pages in categories Glycoside Hydrolase Families and Curator approved, sorted by title, formatted as a normal category page.

{{#dpl:
|category=Glycoside Hydrolase Families
|category=Curator approved
|mode=category
|ordermethod=sortkey
|allowcachedresults=true
}}

Had to deleted live code after testing here, output was messing up table of contents above: Each "G" in the list was getting it's own subheading TOC entry.

Pages in categories Glycoside Hydrolase Families and Curator approved, sorted by title, formatted "inline."

{{#dpl:
|category=Glycoside Hydrolase Families
|category=Curator approved
|resultsheader=\nThere are %TOTALPAGES% Curator Approved GH pages.\n
|mode=inline
|ordermethod=sortkey
|order=descending
|allowcachedresults=yes+warn
}}

There are 140 Curator Approved GH pages.

Pages in categories Glycoside Hydrolase Families and Curator approved, in a sortable table. Note!: Needs the dummy include line, or no output is produced.

{{#dpl:
|category=Glycoside Hydrolase Families
|category=Curator approved
|resultsheader=\nThere are %TOTALPAGES% Curator Approved GH pages.\n
|ordermethod=sortkey
|include=-
|table=class=sortable,GH Families
|allowcachedresults=true
}}

There are 140 Curator Approved GH pages.

GH Families
Glycoside Hydrolase Family 1
Glycoside Hydrolase Family 2
Glycoside Hydrolase Family 3
Glycoside Hydrolase Family 4
Glycoside Hydrolase Family 5
Glycoside Hydrolase Family 6
Glycoside Hydrolase Family 7
Glycoside Hydrolase Family 8
Glycoside Hydrolase Family 9
Glycoside Hydrolase Family 10
Glycoside Hydrolase Family 11
Glycoside Hydrolase Family 12
Glycoside Hydrolase Family 13
Glycoside Hydrolase Family 15
Glycoside Hydrolase Family 16
Glycoside Hydrolase Family 17
Glycoside Hydrolase Family 18
Glycoside Hydrolase Family 19
Glycoside Hydrolase Family 20
Glycoside Hydrolase Family 21
Glycoside Hydrolase Family 22
Glycoside Hydrolase Family 23
Glycoside Hydrolase Family 25
Glycoside Hydrolase Family 26
Glycoside Hydrolase Family 27
Glycoside Hydrolase Family 28
Glycoside Hydrolase Family 29
Glycoside Hydrolase Family 30
Glycoside Hydrolase Family 31
Glycoside Hydrolase Family 32
Glycoside Hydrolase Family 33
Glycoside Hydrolase Family 34
Glycoside Hydrolase Family 35
Glycoside Hydrolase Family 36
Glycoside Hydrolase Family 37
Glycoside Hydrolase Family 38
Glycoside Hydrolase Family 39
Glycoside Hydrolase Family 40
Glycoside Hydrolase Family 41
Glycoside Hydrolase Family 42
Glycoside Hydrolase Family 43
Glycoside Hydrolase Family 44
Glycoside Hydrolase Family 45
Glycoside Hydrolase Family 46
Glycoside Hydrolase Family 47
Glycoside Hydrolase Family 48
Glycoside Hydrolase Family 49
Glycoside Hydrolase Family 50
Glycoside Hydrolase Family 51
Glycoside Hydrolase Family 52
Glycoside Hydrolase Family 53
Glycoside Hydrolase Family 54
Glycoside Hydrolase Family 55
Glycoside Hydrolase Family 57
Glycoside Hydrolase Family 58
Glycoside Hydrolase Family 60
Glycoside Hydrolase Family 61
Glycoside Hydrolase Family 62
Glycoside Hydrolase Family 63
Glycoside Hydrolase Family 64
Glycoside Hydrolase Family 65
Glycoside Hydrolase Family 66
Glycoside Hydrolase Family 67
Glycoside Hydrolase Family 68
Glycoside Hydrolase Family 69
Glycoside Hydrolase Family 70
Glycoside Hydrolase Family 72
Glycoside Hydrolase Family 73
Glycoside Hydrolase Family 74
Glycoside Hydrolase Family 75
Glycoside Hydrolase Family 76
Glycoside Hydrolase Family 77
Glycoside Hydrolase Family 78
Glycoside Hydrolase Family 79
Glycoside Hydrolase Family 80
Glycoside Hydrolase Family 81
Glycoside Hydrolase Family 82
Glycoside Hydrolase Family 84
Glycoside Hydrolase Family 85
Glycoside Hydrolase Family 86
Glycoside Hydrolase Family 88
Glycoside Hydrolase Family 89
Glycoside Hydrolase Family 92
Glycoside Hydrolase Family 93
Glycoside Hydrolase Family 94
Glycoside Hydrolase Family 95
Glycoside Hydrolase Family 97
Glycoside Hydrolase Family 98
Glycoside Hydrolase Family 99
Glycoside Hydrolase Family 101
Glycoside Hydrolase Family 102
Glycoside Hydrolase Family 103
Glycoside Hydrolase Family 104
Glycoside Hydrolase Family 105
Glycoside Hydrolase Family 106
Glycoside Hydrolase Family 107
Glycoside Hydrolase Family 109
Glycoside Hydrolase Family 110
Glycoside Hydrolase Family 112
Glycoside Hydrolase Family 113
Glycoside Hydrolase Family 114
Glycoside Hydrolase Family 115
Glycoside Hydrolase Family 116
Glycoside Hydrolase Family 117
Glycoside Hydrolase Family 119
Glycoside Hydrolase Family 120
Glycoside Hydrolase Family 121
Glycoside Hydrolase Family 123
Glycoside Hydrolase Family 124
Glycoside Hydrolase Family 125
Glycoside Hydrolase Family 127
Glycoside Hydrolase Family 128
Glycoside Hydrolase Family 129
Glycoside Hydrolase Family 130
Glycoside Hydrolase Family 131
Glycoside Hydrolase Family 134
Glycoside Hydrolase Family 135
Glycoside Hydrolase Family 136
Glycoside Hydrolase Family 137
Glycoside Hydrolase Family 138
Glycoside Hydrolase Family 139
Glycoside Hydrolase Family 140
Glycoside Hydrolase Family 141
Glycoside Hydrolase Family 144
Glycoside Hydrolase Family 145
Glycoside Hydrolase Family 146
Glycoside Hydrolase Family 147
Glycoside Hydrolase Family 151
Glycoside Hydrolase Family 155
Glycoside Hydrolase Family 158
Glycoside Hydrolase Family 162
Glycoside Hydrolase Family 164
Glycoside Hydrolase Family 168
Glycoside Hydrolase Family 172
Glycoside Hydrolase Family 173
Glycoside Hydrolase Family 174
Glycoside Hydrolase Family 186
Glycoside Hydrolase Family 187
Glycoside Hydrolase Family 188
Glycoside Hydrolase Family 189

Harry Brumer 19:57, 23 January 2010 (UTC)

Just display number of pages in two categories without a page list.

{{#dpl:
|category=Glycoside Hydrolase Families
|category=Curator approved
|resultsheader=\nThere are %TOTALPAGES% [[:Category:Curator approved]] GH pages.\n
|mode=userformat
}}

There are 140 Curator Approved GH pages.

Harry Brumer 14:01, 12 February 2010 (UTC)

Biblio character encoding problem

A couple of PMIDs seem to not work with the current Biblio.php script hack to switch the character encoding into UTF-8:

pmid=16533067 on the GH84 page (see History, June 30, 2010)
Markovic-Housley2000 pmid=11080624 on the Syn/anti lateral protonation page (see History, June 30, 2010)

Harry Brumer 12:24, 29 July 2010 (UTC)

Upgraded to MW1.16.0

Most everything works fine
Upgraded Extension:ParserFunctions
- Extension:StringFunctions now folded into Extension:ParserFunctions, so required changes made in LocalSettings

Broken

Extension:WhoIsWatchingTabbed

Extension:WhoIsWatchingTabbed does not render the tab with the Vector skin

...but can still be called via the URL using "action=watching"
e.g. http://www.cazypedia.org/index.php?title=Glycoside_Hydrolase_Families&action=watching

Extension:DynamicPageList2

Extension:DynamicPageList2 does not seem to work properly...

Renders HTML tags in page lists from Categories
- See http://www.mediawiki.org/wiki/Extension_talk:DynamicPageList_%28third-party%29#MediaWiki_1.17alpha_and_bug_22675
- also http://www.mediawiki.org/wiki/Special:Code/MediaWiki/68812
Use of $wgRawHtml = true with the current trunk version, DynamicPageList-trunk-r70760.tar.gz, fixes problem, but breaks Biblio due to $wgRawHtml = true (if not set to true, DPL2 is still broken)
Counting total pages in a union of two categories seems not to work quite right.

Testing Extension:Intersection again...

Harry Brumer 11:54, 11 August 2010 (CEST)

Difference between revisions of "User talk:Harry Brumer"

Revision as of 01:59, 11 August 2010

Contents

To-do list

User admin

Direct link to account creation page

Extensions which are installed

Other useful user admin stuff

Optional admin stuff, maybe for future implementation

Where do I find...

Some useful configuration pages

Sitenotice - for adding info to every page

Sitesubtitle - Edited, not sure of the effect...

Some useful extensions

Boilerplate extension - might be useful for creating new page templates

Handle refs. with Biblio:

some templates from wikipedia

Useful icons gallery

Log

UserContactLinks extended syntax extension

Implemented ContactPage extension

Playing around with image thumbnail settings

Implemented Extension:Cite/Special:Cite.php

New version (r50579) of Extension:ParserFunctions added

Pages in Category test

Stopped implementing Extension:EditUser

Implemented Extension:LookupUser

Implemented Template:Smallcaps

Tested Extension:DynamicPageList (a.k.a. Intersection)

Implementing Extension:DynamicPageList2

Examples

Biblio character encoding problem

Upgraded to MW1.16.0

Broken

Extension:WhoIsWatchingTabbed

Extension:DynamicPageList2

Navigation menu

Search