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Difference between revisions of "Lexicon"
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| − | + | The entries listed below comprise a lexicon of key terms and concepts in ''CAZypedia''. Specifically, the aim of the lexicon is to provide a precise definition of various specialized terms unique to carbohydrate chemistry <cite>StickWilliams2009 Sinnott2007 CollinsFerrier1995</cite>, as well as a general overview of the catalytic mechanisms of the major [[Carbohydrate-active enzymes|carbohydrate-active enzyme (CAZyme)]] classes <cite>Sinnott1990 McCarterWithers1994 YipWithers2006 VocadloDavies2008 Lairson2008</cite>. | |
| + | __TOC__ | ||
| − | + | == Curator Approved == | |
| − | < | + | <blockquote class="toccolours" style="float:none; padding: 10px 15px 10px 15px; display:table;"> |
| − | + | [[Image:Approve_icon-50px.png|left]] These pages have been approved by the [[Responsible Curator]] as essentially complete. ''CAZypedia'' is a living document, so further improvement of these pages is still possible; please see the individual pages for more information. | |
| − | + | </blockquote> | |
| − | | | + | {{#dpl: |
| − | | | + | |category=Definitions and explanations |
| − | | | + | |category=Curator approved |
| − | | | + | |mode=userformat |
| + | |resultsheader=\nThere are currently %PAGES% [[:Category:Curator approved|Curator approved]] Lexicon pages in ''CAZypedia''.\n | ||
| + | |noresultsheader=\nThere are currently no pages in this category.\n | ||
| − | | | + | |redirects=exclude |
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| − | |- | + | |allowcachedresults=no |
| − | | | + | }} |
| − | | | + | <div style="-webkit-column-count:3;column-count:3;"> |
| − | | | + | {{#dpl: |
| − | |} | + | |category=Definitions and explanations |
| − | </ | + | |category=Curator approved |
| − | - | + | |ordermethod=sortkey |
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| + | |redirects=exclude | ||
| + | |columns=3 | ||
| + | |rowcolformat=width=100% | ||
| + | |allowcachedresults=no | ||
| + | }} | ||
| + | </div> | ||
| + | |||
| + | == Under construction == | ||
| + | <blockquote class="toccolours" style="float:none; padding: 10px 15px 10px 15px; display:table;"> | ||
| + | [[Image:Under_construction_icon-blue-48px.png|left]]These pages are currently [[:Category:Under construction|under construction]] in ''CAZypedia''. As such, the [[Responsible Curator]] has deemed that the page's content is not quite up to ''CAZypedia's'' standards for full public consumption. All information on these pages should therefore be considered to be under revision and may be subject to major changes. | ||
| + | </blockquote> | ||
| + | {{#dpl: | ||
| + | |category=Definitions and explanations | ||
| + | |category=Under construction | ||
| + | |mode=userformat | ||
| + | |resultsheader=\nThere are currently %PAGES% Lexicon pages [[:Category:Under construction|under construction]] in ''CAZypedia''.\n | ||
| + | |noresultsheader=\nThere are currently no pages in this category.\n | ||
| + | |allowcachedresults=no | ||
| + | }} | ||
| + | <div style="-webkit-column-count:3;column-count:3;"> | ||
| + | {{#dpl: | ||
| + | |category=Definitions and explanations | ||
| + | |category=Under construction | ||
| + | |ordermethod=sortkey | ||
| + | |order=ascending | ||
| + | |redirects=exclude | ||
| + | |columns=3 | ||
| + | |rowcolformat=width=100% | ||
| + | |allowcachedresults=no | ||
| + | }} | ||
| + | </div> | ||
| + | |||
| + | == References == | ||
| + | <biblio> | ||
| + | #StickWilliams2009 isbn=9780240521183 | ||
| + | #CollinsFerrier1995 isbn=0471953431 | ||
| + | #McCarterWithers1994 pmid=7712292 | ||
| + | #VocadloDavies2008 pmid=18558099 | ||
| + | #Sinnott1990 Sinnott, M.L. (1990) Catalytic mechanisms of enzymic glycosyl transfer. Chem. Rev. 90, 1171-1202. [http://dx.doi.org/10.1021/cr00105a006 DOI: 10.1021/cr00105a006] | ||
| + | #Lairson2008 pmid=18518825 | ||
| + | #YipWithers2006 pmid=16495121 | ||
| + | #Sinnott2007 isbn=9780854042562 | ||
| + | </biblio> | ||
Latest revision as of 17:43, 13 December 2021
The entries listed below comprise a lexicon of key terms and concepts in CAZypedia. Specifically, the aim of the lexicon is to provide a precise definition of various specialized terms unique to carbohydrate chemistry [1, 2, 3], as well as a general overview of the catalytic mechanisms of the major carbohydrate-active enzyme (CAZyme) classes [4, 5, 6, 7, 8].
Curator Approved
These pages have been approved by the Responsible Curator as essentially complete. CAZypedia is a living document, so further improvement of these pages is still possible; please see the individual pages for more information.
There are currently 24 Curator approved Lexicon pages in CAZypedia.
- Absolute configuration (D/L nomenclature)
- Alpha-glucan lyases
- Anomeric centre (alpha and beta)
- Carbohydrate Bioengineering Meetings
- Carbohydrate-active enzymes
- Carbohydrate-binding modules
- Catalytic nucleophile
- Cellulosome
- Conformational itinerary
- Conformational nomenclature
- General acid/base
- Glycoside hydrolases
- Glycosyltransferases
- Oxazolinium ion
- Oxocarbenium ion
- Phosphorylases
- Polysaccharide epimerases
- Reaction intermediate
- Sequence-based classification
- Sub-site nomenclature
- Surface Binding Site
- Syn/anti lateral protonation
- Transglycosylases
- Transition state
Under construction
These pages are currently under construction in CAZypedia. As such, the Responsible Curator has deemed that the page's content is not quite up to CAZypedia's standards for full public consumption. All information on these pages should therefore be considered to be under revision and may be subject to major changes.
There are currently 1 Lexicon pages under construction in CAZypedia.
References
- Robert V. Stick and Spencer J. Williams. (2009) Carbohydrates. Elsevier Science.
- Michael Sinnott. (2007) Carbohydrate Chemistry and Biochemistry. Royal Society of Chemistry.
-
Sinnott, M.L. (1990) Catalytic mechanisms of enzymic glycosyl transfer. Chem. Rev. 90, 1171-1202. DOI: 10.1021/cr00105a006
- McCarter JD and Withers SG. (1994). Mechanisms of enzymatic glycoside hydrolysis. Curr Opin Struct Biol. 1994;4(6):885-92. DOI:10.1016/0959-440x(94)90271-2 |
- Yip VL and Withers SG. (2006). Breakdown of oligosaccharides by the process of elimination. Curr Opin Chem Biol. 2006;10(2):147-55. DOI:10.1016/j.cbpa.2006.02.005 |
- Vocadlo DJ and Davies GJ. (2008). Mechanistic insights into glycosidase chemistry. Curr Opin Chem Biol. 2008;12(5):539-55. DOI:10.1016/j.cbpa.2008.05.010 |
- Lairson LL, Henrissat B, Davies GJ, and Withers SG. (2008). Glycosyltransferases: structures, functions, and mechanisms. Annu Rev Biochem. 2008;77:521-55. DOI:10.1146/annurev.biochem.76.061005.092322 |