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Difference between revisions of "Glycoside Hydrolase Family 73"
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== Three-dimensional structures == | == Three-dimensional structures == | ||
− | + | Normal.dotm 0 0 1 123 705 CNRS 5 1 865 12.0 0 false 21 18 pt 18 pt 0 0 false false false | |
+ | |||
+ | Two crystal structure of GH73 are available and have been coincidently reported, FlgJ from ''Sphingomonas sp.'' (SPH1045-C) <cite>1</cite> and Auto a virulence associated peptigoglycan hydrolase from ''Listeria monocytogenes'' <cite>2</cite>. A structure for a catalytic mutant (E185A) of FlgJ has been solved by Maruyama et al <cite>3</cite> but doesn’t show any conformational changes. The two GH73 show the same fold, with two subdomains consisting of a β-lobe and an α-lobe that together create an extended substrate binding groove. With a typical lysozyme (α+β) fold, the catalytic domain of Auto is structurally related to the catalytic domain of Slt70 from ''E. coli''<cite>5</cite>, the family [[GH19]] chitinases and goose egg-white lysozyme (GEWL, [[GH23]])<cite>4</cite>. FlgJ is structurally related to a peptidoglycan degrading enzyme from the bacteriophage phi 29 <cite>6</cite> and also to family [[GH22]] and [[GH23]] lysozymes. | ||
Revision as of 00:46, 21 July 2010
This page is currently under construction. This means that the Responsible Curator has deemed that the page's content is not quite up to CAZypedia's standards for full public consumption. All information should be considered to be under revision and may be subject to major changes.
- Author: ^^^Florence Vincent^^^
- Responsible Curator: ^^^Bernard Henrissat^^^
Glycoside Hydrolase Family GH73 | |
Clan | none, α+β "lysozyme fold" |
Mechanism | not known |
Active site residues | partially known |
CAZy DB link | |
https://www.cazy.org/GH73.html |
Substrate specificities
Content is to be added here.
This is an example of how to make references to a journal article [1]. (See the References section below). Multiple references can go in the same place like this [1, 2]. You can even cite books using just the ISBN [3]. References that are not in PubMed can be typed in by hand [4].
Kinetics and Mechanism
Content is to be added here.
Catalytic Residues
Content is to be added here.
Three-dimensional structures
Normal.dotm 0 0 1 123 705 CNRS 5 1 865 12.0 0 false 21 18 pt 18 pt 0 0 false false false
Two crystal structure of GH73 are available and have been coincidently reported, FlgJ from Sphingomonas sp. (SPH1045-C) [5] and Auto a virulence associated peptigoglycan hydrolase from Listeria monocytogenes [6]. A structure for a catalytic mutant (E185A) of FlgJ has been solved by Maruyama et al [7] but doesn’t show any conformational changes. The two GH73 show the same fold, with two subdomains consisting of a β-lobe and an α-lobe that together create an extended substrate binding groove. With a typical lysozyme (α+β) fold, the catalytic domain of Auto is structurally related to the catalytic domain of Slt70 from E. coli[8], the family GH19 chitinases and goose egg-white lysozyme (GEWL, GH23)[9]. FlgJ is structurally related to a peptidoglycan degrading enzyme from the bacteriophage phi 29 [10] and also to family GH22 and GH23 lysozymes.
Family Firsts
- First stereochemistry determination
- Cite some reference here, with a short (1-2 sentence) explanation [1].
- First catalytic nucleophile identification
- Cite some reference here, with a short (1-2 sentence) explanation [4].
- First general acid/base residue identification
- Cite some reference here, with a short (1-2 sentence) explanation [2].
- First 3-D structure
- Cite some reference here, with a short (1-2 sentence) explanation [3].
References
- Comfort DA, Bobrov KS, Ivanen DR, Shabalin KA, Harris JM, Kulminskaya AA, Brumer H, and Kelly RM. (2007). Biochemical analysis of Thermotoga maritima GH36 alpha-galactosidase (TmGalA) confirms the mechanistic commonality of clan GH-D glycoside hydrolases. Biochemistry. 2007;46(11):3319-30. DOI:10.1021/bi061521n |
- He S and Withers SG. (1997). Assignment of sweet almond beta-glucosidase as a family 1 glycosidase and identification of its active site nucleophile. J Biol Chem. 1997;272(40):24864-7. DOI:10.1074/jbc.272.40.24864 |
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Sinnott, M.L. (1990) Catalytic mechanisms of enzymic glycosyl transfer. Chem. Rev. 90, 1171-1202. DOI: 10.1021/cr00105a006