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Difference between revisions of "Carbohydrate Binding Module Families"
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<blockquote class="toccolours" style="float:none; padding: 10px 15px 10px 15px; display:table;"> | <blockquote class="toccolours" style="float:none; padding: 10px 15px 10px 15px; display:table;"> | ||
| − | ''Note ( | + | ''Note (November 2024): We are in full development of our individual CBM pages in CAZypedia and our long-term goal is to have complete coverage of all of the [http://www.cazy.org/Carbohydrate-Binding-Modules.html CBM families represented in the CAZy database]. This effort is being led by [[User:Elizabeth Ficko-Blean|Elizabeth Ficko-Blean]] and was initiated by [[User:Alicia Lammerts van Bueren|Alicia Lammerts van Bueren]], together with the [[Board of Curators|Senior Curators]]. If you would like to become involved in the development of the CBM pages, please contact [[User:Elizabeth Ficko-Blean|Elizabeth Ficko-Blean]] at <email>efickoblean@sb-roscoff.fr</email>.''</blockquote> |
| − | + | ''This page lists all the Carbohydrate Binding Module (CBM) Family pages in ''CAZypedia'' that have been given [[:Category:Curator approved|Curator Approved]] status, as well as those that are currently [[:Category:Under construction|under construction]].'' | |
| − | '' | ||
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| + | ==Overview== | ||
| + | [[Carbohydrate-binding modules]] (CBMs) are non-catalytic proteins with the capacity to bind to soluble and crystalline carbohydrates. CBMs are typically found within a longer protein sequence, co-occurring with catalytic modules of carbohydrate active enzymes, e.g. [[Glycoside Hydrolase Families|Glycoside Hydrolases]] and [[Polysaccharide Lyases]], where they serve to enhance the catalytic activity of the enzymatic module(s) <cite>Boraston2004 Shoseyov2006 Hashimoto2006 Guillen2010 Ficko-Blean2012 Gilbert2013 Armenta2017</cite>. For a comprehensive overview, see the [[Carbohydrate-binding modules]] Lexicon page. | ||
== Curator Approved == | == Curator Approved == | ||
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|category=Carbohydrate Binding Module Families | |category=Carbohydrate Binding Module Families | ||
|category=Curator approved | |category=Curator approved | ||
| − | |resultsheader=\nThere are currently %PAGES% [[:Category:Curator approved|Curator approved]] Carbohydrate Binding Module Family pages in ''CAZypedia''.\n\n | + | |mode=userformat |
| − | | | + | |resultsheader=\nThere are currently %PAGES% [[:Category:Curator approved|Curator approved]] Carbohydrate Binding Module (CBM) Family pages in ''CAZypedia''.\n |
| − | | | + | |noresultsheader=\nThere are currently no pages in this category.\n |
| + | |allowcachedresults=no | ||
| + | }} | ||
| + | <div style="-webkit-column-count:10;column-count:10;"> | ||
| + | {{#dpl: | ||
| + | |category=Carbohydrate Binding Module Families | ||
| + | |category=Curator approved | ||
|ordermethod=sortkey | |ordermethod=sortkey | ||
|order=ascending | |order=ascending | ||
| + | |replaceintitle=/Carbohydrate Binding Module Family /,CBM | ||
| + | |columns=10 | ||
| + | |rowcolformat=width=100% | ||
|allowcachedresults=no | |allowcachedresults=no | ||
}} | }} | ||
| − | + | </div> | |
== Under construction == | == Under construction == | ||
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|category=Carbohydrate Binding Module Families | |category=Carbohydrate Binding Module Families | ||
|category=Under construction | |category=Under construction | ||
| − | |resultsheader=\nThere are currently %PAGES% Carbohydrate Binding Module Family pages [[:Category:Under construction| | + | |mode=userformat |
| − | | | + | |resultsheader=\nThere are currently %PAGES% Carbohydrate Binding Module Family pages [[:Category:Under construction|under construction]] in ''CAZypedia''.\n |
| − | | | + | |noresultsheader=\nThere are currently no pages in this category.\n |
| + | |allowcachedresults=no | ||
| + | }} | ||
| + | <div style="-webkit-column-count:10;column-count:10;"> | ||
| + | {{#dpl: | ||
| + | |category=Carbohydrate Binding Module Families | ||
| + | |category=Under construction | ||
|ordermethod=sortkey | |ordermethod=sortkey | ||
|order=ascending | |order=ascending | ||
| + | |replaceintitle=/Carbohydrate Binding Module Family /,CBM | ||
| + | |columns=10 | ||
| + | |rowcolformat=width=100% | ||
|allowcachedresults=no | |allowcachedresults=no | ||
}} | }} | ||
| − | + | </div> | |
== Unassigned pages == | == Unassigned pages == | ||
<blockquote class="toccolours" style="float:none; padding: 10px 15px 10px 15px; display:table;"> | <blockquote class="toccolours" style="float:none; padding: 10px 15px 10px 15px; display:table;"> | ||
| − | [[File:Blank user-200px.png|left|40px]]The following [[:Category:Unassigned pages|Unassigned pages]] are currently lacking a [[Responsible Curator]] and one or more [[Author]]s. If you are an expert on any of these families and would like to help us improve ''CAZypedia'' by getting involved with the production and maintenance of the corresponding page(s), please contact a member of the [[Board of Curators | + | [[File:Blank user-200px.png|left|40px]]The following [[:Category:Unassigned pages|Unassigned pages]] are currently lacking a [[Responsible Curator]] and one or more [[Author]]s. If you are an expert on any of these families and would like to help us improve ''CAZypedia'' by getting involved with the production and maintenance of the corresponding page(s), please contact a member of the [[Board of Curators]]. |
</blockquote> | </blockquote> | ||
{{#dpl: | {{#dpl: | ||
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|category=Unassigned pages | |category=Unassigned pages | ||
|resultsheader=\nThere are currently %PAGES% Carbohydrate Binding Module Family pages in ''CAZypedia'' that have not been assigned to a [[Responsible Curator]].\n | |resultsheader=\nThere are currently %PAGES% Carbohydrate Binding Module Family pages in ''CAZypedia'' that have not been assigned to a [[Responsible Curator]].\n | ||
| − | | | + | |noresultsheader=\nAll [http://www.cazy.org/Carbohydrate-Binding-Modules.html CBM] Family pages not listed above are currently unassigned. Please contact us if you'd like to get involved with the creation of these pages. ''Undergraduate students, (post)graduate students, post-doctoral researchers, research associates, and professors are all welcomed to contribute!''\n |
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|ordermethod=sortkey | |ordermethod=sortkey | ||
|order=ascending | |order=ascending | ||
| + | |replaceintitle=/Carbohydrate Binding Module Family /,CBM | ||
| + | |columns=10 | ||
| + | |rowcolformat=width=100% | ||
|allowcachedresults=no | |allowcachedresults=no | ||
}} | }} | ||
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== Deleted families == | == Deleted families == | ||
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|category=Carbohydrate Binding Module Families | |category=Carbohydrate Binding Module Families | ||
|category=Deleted families | |category=Deleted families | ||
| + | |mode=userformat | ||
|resultsheader=\nThere are currently %PAGES% pages in ''CAZypedia'' that describe Carbohydrate Binding Module families deleted from the CAZy DB.\n | |resultsheader=\nThere are currently %PAGES% pages in ''CAZypedia'' that describe Carbohydrate Binding Module families deleted from the CAZy DB.\n | ||
| − | | | + | |noresultsheader=\nThere are currently no pages in this category.\n |
| − | | | + | |allowcachedresults=no |
| + | }} | ||
| + | <div style="-webkit-column-count:10;column-count:10;">{{#dpl: | ||
| + | |category=Carbohydrate Binding Module Families | ||
| + | |category=Deleted families | ||
|ordermethod=sortkey | |ordermethod=sortkey | ||
|order=ascending | |order=ascending | ||
| + | |replaceintitle=/Carbohydrate Binding Module Family /,CBM | ||
| + | |columns=10 | ||
| + | |rowcolformat=width=100% | ||
|allowcachedresults=no | |allowcachedresults=no | ||
}} | }} | ||
| + | </div> | ||
| − | + | == References == | |
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<biblio> | <biblio> | ||
#Boraston2004 pmid=15214846 | #Boraston2004 pmid=15214846 | ||
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#Guillen2010 pmid=19908036 | #Guillen2010 pmid=19908036 | ||
#Ficko-Blean2012 pmid=22858095 | #Ficko-Blean2012 pmid=22858095 | ||
| − | # | + | #Gilbert2013 pmid=23769966 |
| + | #Armenta2017 pmid=28547780 | ||
</biblio> | </biblio> | ||
Latest revision as of 07:23, 4 November 2024
Note (November 2024): We are in full development of our individual CBM pages in CAZypedia and our long-term goal is to have complete coverage of all of the CBM families represented in the CAZy database. This effort is being led by Elizabeth Ficko-Blean and was initiated by Alicia Lammerts van Bueren, together with the Senior Curators. If you would like to become involved in the development of the CBM pages, please contact Elizabeth Ficko-Blean at <email>efickoblean@sb-roscoff.fr</email>.
This page lists all the Carbohydrate Binding Module (CBM) Family pages in CAZypedia that have been given Curator Approved status, as well as those that are currently under construction.
Overview
Carbohydrate-binding modules (CBMs) are non-catalytic proteins with the capacity to bind to soluble and crystalline carbohydrates. CBMs are typically found within a longer protein sequence, co-occurring with catalytic modules of carbohydrate active enzymes, e.g. Glycoside Hydrolases and Polysaccharide Lyases, where they serve to enhance the catalytic activity of the enzymatic module(s) [1, 2, 3, 4, 5, 6, 7]. For a comprehensive overview, see the Carbohydrate-binding modules Lexicon page.
Curator Approved
These pages have been approved by the Responsible Curator as essentially complete. CAZypedia is a living document, so further improvement of these pages is still possible; please see the individual pages for more information.
There are currently 63 Curator approved Carbohydrate Binding Module (CBM) Family pages in CAZypedia.
- CBM1
- CBM2
- CBM3
- CBM4
- CBM5
- CBM6
- CBM7
- CBM8
- CBM9
- CBM10
- CBM14
- CBM15
- CBM16
- CBM19
- CBM20
- CBM21
- CBM22
- CBM28
- CBM29
- CBM32
- CBM33
- CBM35
- CBM41
- CBM42
- CBM44
- CBM46
- CBM47
- CBM48
- CBM49
- CBM50
- CBM55
- CBM58
- CBM60
- CBM62
- CBM63
- CBM65
- CBM66
- CBM67
- CBM71
- CBM73
- CBM75
- CBM76
- CBM77
- CBM78
- CBM79
- CBM80
- CBM81
- CBM82
- CBM83
- CBM86
- CBM87
- CBM89
- CBM92
- CBM94
- CBM96
- CBM99
- CBM100
- CBM101
- CBM102
- CBM103
- CBM105
- CBM106
- CBM70
Under construction
These pages are currently under construction in CAZypedia. As such, the Responsible Curator has deemed that the page's content is not quite up to CAZypedia's standards for full public consumption. All information on these pages should therefore be considered to be under revision and may be subject to major changes.
There are currently 8 Carbohydrate Binding Module Family pages under construction in CAZypedia.
Unassigned pages
The following Unassigned pages are currently lacking a Responsible Curator and one or more Authors. If you are an expert on any of these families and would like to help us improve CAZypedia by getting involved with the production and maintenance of the corresponding page(s), please contact a member of the Board of Curators.
All CBM Family pages not listed above are currently unassigned. Please contact us if you'd like to get involved with the creation of these pages. Undergraduate students, (post)graduate students, post-doctoral researchers, research associates, and professors are all welcomed to contribute!
Deleted families
The following families have been deleted from the CAZy database. Please see the individual CAZypedia pages and links to the corresponding CAZy DB pages for specific explanations.
There are currently 2 pages in CAZypedia that describe Carbohydrate Binding Module families deleted from the CAZy DB.
References
- Boraston AB, Bolam DN, Gilbert HJ, and Davies GJ. (2004). Carbohydrate-binding modules: fine-tuning polysaccharide recognition. Biochem J. 2004;382(Pt 3):769-81. DOI:10.1042/BJ20040892 |
- Shoseyov O, Shani Z, and Levy I. (2006). Carbohydrate binding modules: biochemical properties and novel applications. Microbiol Mol Biol Rev. 2006;70(2):283-95. DOI:10.1128/MMBR.00028-05 |
- Hashimoto H (2006). Recent structural studies of carbohydrate-binding modules. Cell Mol Life Sci. 2006;63(24):2954-67. DOI:10.1007/s00018-006-6195-3 |
- Guillén D, Sánchez S, and Rodríguez-Sanoja R. (2010). Carbohydrate-binding domains: multiplicity of biological roles. Appl Microbiol Biotechnol. 2010;85(5):1241-9. DOI:10.1007/s00253-009-2331-y |
- Ficko-Blean E and Boraston AB. (2012). Insights into the recognition of the human glycome by microbial carbohydrate-binding modules. Curr Opin Struct Biol. 2012;22(5):570-7. DOI:10.1016/j.sbi.2012.07.009 |
- Gilbert HJ, Knox JP, and Boraston AB. (2013). Advances in understanding the molecular basis of plant cell wall polysaccharide recognition by carbohydrate-binding modules. Curr Opin Struct Biol. 2013;23(5):669-77. DOI:10.1016/j.sbi.2013.05.005 |
- Armenta S, Moreno-Mendieta S, Sánchez-Cuapio Z, Sánchez S, and Rodríguez-Sanoja R. (2017). Advances in molecular engineering of carbohydrate-binding modules. Proteins. 2017;85(9):1602-1617. DOI:10.1002/prot.25327 |