Glycosyltransferase Family 1

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• Author: David Teze
• Responsible Curator: David Teze

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Glycosyltransferase Family GT1
Fold	GT-B, 2 Rosmann domains
Mechanism	Inverting via a SN2 (O-, N-, S-) or SEAr (C-)
Active site residues	Generally a His/Asp dyad as catalytic base
CAZy DB link
https://www.cazy.org/GT1.html

Substrate specificities

Family 1 glycosyltransferases or GT1s[1, 2] are more often refered to as UGTs, for UDP-dependent glycosyltransferases. Indeed, the most common glycosyl donnor substrates are UDP-α-D-glycosyl, but other nucleotide sugars can be found as well. They are thus also part of the Leloir glycosyltransferases. To date (July 2024), there are no described CAZy subfamilies of GT1s. On the other hand, over hundred subfamilies of GT1s are described in the UGT naming convention system, which organise the enzymes in funtion of the kingdom of their provenance (plant, animal, bacteria) and by phylogeny, based on a system developped for UDP-glucuronyltransferases [3]. This convention is widely used to name the individual enzymes as well, allowing from the name of the enzyme to know which subfamily it belongs to. As acceptor substrate specificity is loosely connected to phylogeny, the enzymes names also allow to have an idea of which class of acceptors are most probable.

Kinetics and Mechanism

The overall mechanism of GT1 enzymes features a catalytic base which activates the glycosyl acceptor, while the nucleotide glycosyl donor dissociate into an ion-pair between an oxocarbenium-like glycosyl and the phosphate of the nucleotide.

Catalytic Residues

The large majority of GT1 presents a His-Asp catalytic dyad, acting as a general base. The histidine abstract a proton, increasing the nucleophilicity of the glycosyl acceptor. The aspartate activates the histidine, the abstracted proton being shared almost equally between these two residues.

Three-dimensional structures

From 2021 to July 2024, experimental structures of 75 different GT1 enzymes have been deposited, including with donors and acceptors. GT1 present a GT-B fold [4], characterized by two Rossman domains. The N-terminal domain binds the glycosyl acceptor site (+1), and the C-terminal one (-1) binds the glycosyl donor, usually a UDP alpha glycosyl.

Family Firsts

First 3D structure, GtfB (Amycolatopsis orientalis) PDB ID 1IIR in 2001 [5].

References

1. Davies, G.J. and Sinnott, M.L. (2008) Sorting the diverse: the sequence-based classifications of carbohydrate-active enzymes. The Biochemist, vol. 30, no. 4., pp. 26-32. DOI:10.1042/BIO03004026.

2. Cantarel BL, Coutinho PM, Rancurel C, Bernard T, Lombard V, and Henrissat B. (2009). The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics. Nucleic Acids Res. 2009;37(Database issue):D233-8. DOI:10.1093/nar/gkn663 |
3. Ross J, Li Y, Lim E, and Bowles DJ. (2001). Higher plant glycosyltransferases. Genome Biol. 2001;2(2):REVIEWS3004. DOI:10.1186/gb-2001-2-2-reviews3004 |
4. Bourne Y and Henrissat B. (2001). Glycoside hydrolases and glycosyltransferases: families and functional modules. Curr Opin Struct Biol. 2001;11(5):593-600. DOI:10.1016/s0959-440x(00)00253-0 |
5. Mulichak AM, Losey HC, Walsh CT, and Garavito RM. (2001). Structure of the UDP-glucosyltransferase GtfB that modifies the heptapeptide aglycone in the biosynthesis of vancomycin group antibiotics. Structure. 2001;9(7):547-57. DOI:10.1016/s0969-2126(01)00616-5 |